Zfp955a (zinc finger protein 955A) - Chinchilla Research Resource Database
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Gene: Zfp955a (zinc finger protein 955A) Mus musculus
Analyze
Symbol: Zfp955a
Name: zinc finger protein 955A
CRRD ID: 4145047
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to localize to nuclear chromatin; INTERACTS WITH 1,2-dimethylhydrazine; carbon nanotube; dichloromethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI8424; AI842447; Zfp883a; zinc finger protein 883A
Orthologs:
No known orthologs. homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391733,458,481 - 33,474,138 (-)NCBI
GRCm381733,239,507 - 33,255,168 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,239,718 - 33,255,145 (-)EnsemblGRCm38mm10GRCm38
MGSCv371733,376,452 - 33,392,090 (-)NCBIGRCm37mm9NCBIm37
MGSCv361732,902,592 - 32,920,251 (+)NCBImm8
Celera1736,043,930 - 36,068,400 (+)NCBICelera
Cytogenetic Map17B1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IBA)

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:14706453   PMID:15618518  
PMID:16141072   PMID:16141073   PMID:19723774   PMID:21267068   PMID:21873635  


Genomics

Position Markers
Zfp422  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6E3UniSTS
Cytogenetic Map17B1UniSTS
cM Map6 UniSTS
BG379587  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381733,301,822 - 33,301,942UniSTSGRCm38
GRCm381733,242,773 - 33,242,893UniSTSGRCm38
MGSCv371733,438,767 - 33,438,887UniSTSGRCm37
MGSCv371733,379,718 - 33,379,838UniSTSGRCm37
Celera1736,064,914 - 36,065,034UniSTS
Cytogenetic Map17B1UniSTS
AI842447  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381733,112,053 - 33,112,146UniSTSGRCm38
MGSCv371733,248,998 - 33,249,091UniSTSGRCm37
Celera1734,018,927 - 34,019,020UniSTS
Whitehead/MRC_RH17490.65UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
CRRD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171661519333600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172485760955405969Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172536594043665344Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172574029459740461Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172618203852604676Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172628636340794146Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172657408160574223Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172749681845311728Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172750432261504322Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172765914543574223Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172831148062311728Mouse
11038694Pas19_mpulmonary adenoma susceptibility 19 (mouse)172949219034535463Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined172982162963821740Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3072257564722705Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3076892947728778Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173184267837333884Mouse
25394538Skmw84_mskeletal muscle weight 84, TA (mouse)173244145235301060Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173290000053800000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:52
Interacting mature miRNAs:53
Transcripts:ENSMUST00000008830
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000008830   ⟹   ENSMUSP00000008830
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1733,239,718 - 33,255,145 (-)Ensembl
RefSeq Acc Id: NM_029952   ⟹   NP_084228
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391733,458,481 - 33,474,119 (-)NCBI
GRCm381733,239,507 - 33,255,145 (-)NCBI
MGSCv371733,376,452 - 33,392,090 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525122   ⟹   XP_006525185
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391733,458,692 - 33,474,138 (-)NCBI
GRCm381733,239,718 - 33,255,168 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_084228   ⟸   NM_029952
- UniProtKB: Q80XR7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525185   ⟸   XM_006525122
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000008830   ⟸   ENSMUST00000008830
Protein Domains
C2H2-type   KRAB

Promoters
RGD ID:13675560
Promoter ID:EPDNEW_M21929
Type:initiation region
Name:Zfp955a_1
Description:Mus musculus zinc finger protein 955A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381733,255,114 - 33,255,174EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:4834570 AgrOrtholog
Ensembl Genes ENSMUSG00000094441 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000008830 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000008830 ENTREZGENE, UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:77652 UniProtKB/TrEMBL
MGD MGI:4834570 ENTREZGENE
NCBI Gene 77652 ENTREZGENE
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp955a PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniGene Mm.460572 ENTREZGENE
UniProt Q80XR7 ENTREZGENE, UniProtKB/TrEMBL
  Q8CAE8_MOUSE UniProtKB/TrEMBL
  Q8CCP9_MOUSE UniProtKB/TrEMBL
UniProt Secondary D3Z5K4 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Zfp955a  zinc finger protein 955A  Zfp883a  zinc finger protein 883A  Symbol and/or name change 5135510 APPROVED