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Gene: Psma6 (proteasome 20S subunit alpha 6) Rattus norvegicus
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Symbol: Psma6
Name: proteasome 20S subunit alpha 6
Description: Predicted to have NF-kappaB binding activity; RNA binding activity; and endopeptidase activity. Predicted to be involved in positive regulation of NF-kappaB transcription factor activity; proteasomal ubiquitin-independent protein catabolic process; and proteasome-mediated ubiquitin-dependent protein catabolic process. Localizes to the sarcomere. Human ortholog(s) of this gene implicated in myocardial infarction. Orthologous to human PSMA6 (proteasome 20S subunit alpha 6); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: macropain iota chain; MGC72876; multicatalytic endopeptidase complex iota chain; proteasome (prosome, macropain) subunit, alpha type 6; proteasome alpha 6 subunit; proteasome iota chain; proteasome subunit alpha 6; proteasome subunit alpha type-6
Orthologs:
Homo sapiens (human) : PSMA6 (proteasome 20S subunit alpha 6)  HGNC  Alliance
Mus musculus (house mouse) : Psma6 (proteasome subunit alpha 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Psma6 (proteasome 20S subunit alpha 6)
Pan paniscus (bonobo/pygmy chimpanzee) : PSMA6 (proteasome 20S subunit alpha 6)
Canis lupus familiaris (dog) : PSMA6 (proteasome subunit alpha 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Psma6 (proteasome 20S subunit alpha 6)
Sus scrofa (pig) : PSMA6 (proteasome 20S subunit alpha 6)
more info ...
Related Pseudogenes: RGD1560350  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0676,174,460 - 76,205,429 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl676,174,452 - 76,205,426 (+)Ensembl
Rnor_5.0685,711,990 - 85,742,474 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4675,649,844 - 75,667,404 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1675,652,972 - 75,670,527 (+)NCBI
Celera671,619,646 - 71,637,029 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Psma6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 61849
Created: 2001-04-11
Species: Rattus norvegicus
Last Modified: 2019-09-24
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.