Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Ptp4a1 (protein tyrosine phosphatase 4A1) Rattus norvegicus
Analyze
Symbol: Ptp4a1
Name: protein tyrosine phosphatase 4A1
Description: Exhibits protein tyrosine phosphatase activity. Predicted to be involved in positive regulation of cell migration. Localizes to the nucleus. Orthologous to human PTP4A1 (protein tyrosine phosphatase 4A1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-nitrofluorene; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC100360241; MGC93357; PRL-1; protein tyrosine phosphatase 4a1-like; protein tyrosine phosphatase type IVA 1; protein tyrosine phosphatase type IVA, member 1; protein-tyrosine phosphatase 4a1; protein-tyrosine phosphatase of regenerating liver 1
Orthologs:
Homo sapiens (human) : PTP4A1 (protein tyrosine phosphatase 4A1)  HGNC  Alliance
Mus musculus (house mouse) : Ptp4a1 (protein tyrosine phosphatase 4a1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ptp4a1 (protein tyrosine phosphatase 4A1)
Pan paniscus (bonobo/pygmy chimpanzee) : PTP4A1 (protein tyrosine phosphatase 4A1)
Canis lupus familiaris (dog) : PTP4A1 (protein tyrosine phosphatase 4A1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ptp4a1 (protein tyrosine phosphatase 4A1)
Sus scrofa (pig) : PTP4A1 (protein tyrosine phosphatase 4A1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Note: The loci 103693189 and 29463 are annotated independently on Rnor_6.0 (Annotation Release 105) assembly. [04 Jun 2015]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0937,223,363 - 37,254,222 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl937,223,729 - 37,231,291 (-)Ensembl
Rnor_5.0936,028,286 - 36,059,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4929,617,636 - 29,625,197 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1929,618,696 - 29,626,440 (-)NCBI
Celera931,034,176 - 31,042,102 (-)NCBICelera
Cytogenetic Map9q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression


Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Ptp4a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 61970
Created: 2001-04-11
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.