Gene: Atrx (ATRX, chromatin remodeler) Rattus norvegicus
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Symbol: Atrx
Name: ATRX, chromatin remodeler
Description: Predicted to have several functions, including DNA translocase activity, chromatin binding activity, and chromo shadow domain binding activity; predicted to be involved in several processes, including animal organ development, chromatin organization, and positive regulation of cellular metabolic process; localizes to the cytoplasm and nucleus; orthologous to human ATRX (ATRX chromatin remodeler); INTERACTS WITH (+)-pilocarpine; (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine.
Type: protein-coding
RefSeq Status: MODEL
Also known as: alpha thalassemia/mental retardation syndrome X-linked; alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae); alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S.cerevisiae); alpha thalassemia/mental retardation syndrome X-linked homolog; alpha thalassemia/mental retardation syndrome X-linked homolog (human); ATP-dependent helicase ATRX; helicase II; LOW QUALITY PROTEIN: transcriptional regulator ATRX; pABP-2; transcriptional regulator ATRX; X-linked nuclear protein; Xnp
Orthologs:
Homo sapiens (human) : ATRX (ATRX chromatin remodeler)  HGNC  Alliance
Mus musculus (house mouse) : Atrx (ATRX, chromatin remodeler)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atrx (ATRX chromatin remodeler)
Pan paniscus (bonobo/pygmy chimpanzee) : ATRX (ATRX chromatin remodeler)
Canis lupus familiaris (dog) : ATRX (ATRX chromatin remodeler)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atrx (ATRX chromatin remodeler)
Sus scrofa (pig) : ATRX (ATRX chromatin remodeler)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X76,820,110 - 76,979,155 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X55,943,493 - 56,101,756 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X77,469,497 - 77,515,204 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X93,903,794 - 94,051,337 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X94,034,366 - 94,057,029 (-)NCBI
CeleraX72,164,814 - 72,309,854 (-)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Atrx
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 619795
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.