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Gene: Calcoco1 (calcium binding and coiled coil domain 1) Rattus norvegicus
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Symbol: Calcoco1
Name: calcium binding and coiled coil domain 1
Description: Predicted to have several functions, including RNA polymerase II distal enhancer sequence-specific DNA binding activity; armadillo repeat domain binding activity; and beta-catenin binding activity. Predicted to be involved in intracellular steroid hormone receptor signaling pathway and positive regulation of transcription by RNA polymerase II. Predicted to localize to the cytosol and nuclear chromatin. Orthologous to human CALCOCO1 (calcium binding and coiled-coil domain 1); PARTICIPATES IN estrogen signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: calcium-binding and coiled-coil domain-containing protein 1; KIAA1536; MGC93160
Orthologs:
Homo sapiens (human) : CALCOCO1 (calcium binding and coiled-coil domain 1)  HGNC  Alliance
Mus musculus (house mouse) : Calcoco1 (calcium binding and coiled coil domain 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Calcoco1 (calcium binding and coiled-coil domain 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CALCOCO1 (calcium binding and coiled-coil domain 1)
Canis lupus familiaris (dog) : CALCOCO1 (calcium binding and coiled-coil domain 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Calcoco1 (calcium binding and coiled-coil domain 1)
Sus scrofa (pig) : CALCOCO1 (calcium binding and coiled-coil domain 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07144,307,562 - 144,322,253 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,307,509 - 144,322,240 (-)Ensembl
Rnor_5.07142,099,780 - 142,114,471 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47141,456,249 - 141,470,966 (-)NCBIRGSC3.4rn4RGSC3.4
Celera7130,261,950 - 130,276,675 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression


Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Calcoco1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 619812
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.