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Gene: Scfd1 (sec1 family domain containing 1) Rattus norvegicus
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Symbol: Scfd1
Name: sec1 family domain containing 1
Description: Exhibits protein N-terminus binding activity and syntaxin binding activity. Involved in Golgi vesicle transport; regulation of ER to Golgi vesicle-mediated transport; and response to hypoxia. Localizes to the Golgi-associated vesicle and plasma membrane. Orthologous to human SCFD1 (sec1 family domain containing 1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: RA410; rSly1; sec1 family domain-containing protein 1; Sly1; SLY1 homolog; sly1p; syntaxin-binding protein 1-like 2; vesicle transport-related; vesicle transport-related protein Ra410
Orthologs:
Homo sapiens (human) : SCFD1 (sec1 family domain containing 1)  HGNC  Alliance
Mus musculus (house mouse) : Scfd1 (Sec1 family domain containing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Scfd1 (sec1 family domain containing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SCFD1 (sec1 family domain containing 1)
Canis lupus familiaris (dog) : SCFD1 (sec1 family domain containing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Scfd1 (sec1 family domain containing 1)
Sus scrofa (pig) : SCFD1 (sec1 family domain containing 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0672,124,408 - 72,202,703 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl672,124,417 - 72,202,713 (+)Ensembl
Rnor_5.0681,688,247 - 81,766,841 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4671,453,366 - 71,532,347 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1671,456,491 - 71,535,473 (+)NCBI
Celera667,685,656 - 67,762,975 (+)NCBICelera
Cytogenetic Map6q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Scfd1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 619828
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.