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Gene: Ddx39a (DExD-box helicase 39A) Rattus norvegicus
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Symbol: Ddx39a
Name: DExD-box helicase 39A
Description: Predicted to have ATPase activity and identical protein binding activity. Predicted to be involved in mRNA export from nucleus and mRNA splicing, via spliceosome. Predicted to colocalize with the cytoplasm. Orthologous to human DDX39A (DExD-box helicase 39A); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ATP-dependent RNA helicase DDX39; ATP-dependent RNA helicase DDX39A; Ddx39; Ddxl; DEAD (Asp-Glu-Ala-Asp) box polypeptide 39; DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A; DEAD box protein 39; DEAD-box helicase 39A; MGC105369; nuclear RNA helicase, DECD variant of DEAD box family
Orthologs:
Homo sapiens (human) : DDX39A (DExD-box helicase 39A)  HGNC  Alliance
Mus musculus (house mouse) : Ddx39 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 39)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ddx39a (DExD-box helicase 39A)
Pan paniscus (bonobo/pygmy chimpanzee) : DDX39A (DExD-box helicase 39A)
Canis lupus familiaris (dog) : DDX39A (DExD-box helicase 39A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ddx39a (DExD-box helicase 39A)
Sus scrofa (pig) : DDX39A (DExD-box helicase 39A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01924,846,530 - 24,854,886 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01935,825,375 - 35,834,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41926,109,094 - 26,117,042 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11926,113,921 - 26,121,868 (-)NCBI
Celera1923,962,103 - 23,970,051 (-)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Ddx39a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 619920
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.