Gene: Capn5 (calpain 5) Rattus norvegicus
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Symbol: Capn5
Name: calpain 5
Description: Predicted to have calcium-dependent cysteine-type endopeptidase activity; involved in granulosa cell differentiation, luteinization, and ovarian follicle development; predicted to localize to the cell surface and cytoplasm; orthologous to human CAPN5 (calpain 5); INTERACTS WITH (RS)-amphetamine; 17beta-estradiol; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: calpain-5; high-temperature requirement factor A3; Htra3
Orthologs:
Homo sapiens (human) : CAPN5 (calpain 5)  HGNC  Alliance
Mus musculus (house mouse) : Capn5 (calpain 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Capn5 (calpain 5)
Pan paniscus (bonobo/pygmy chimpanzee) : CAPN5 (calpain 5)
Canis lupus familiaris (dog) : CAPN5 (calpain 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Capn5 (calpain 5)
Sus scrofa (pig) : CAPN5 (calpain 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01163,073,134 - 163,129,736 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01169,278,330 - 169,336,574 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41155,366,678 - 155,421,183 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11155,445,083 - 155,499,584 (-)NCBI
Celera1150,507,123 - 150,563,735 (-)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Capn5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620084
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.