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Gene: Sf3b1 (splicing factor 3b, subunit 1) Rattus norvegicus
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Symbol: Sf3b1
Name: splicing factor 3b, subunit 1
Description: Predicted to have chromatin binding activity and mRNA binding activity. Predicted to be involved in anterior/posterior pattern specification; blastocyst formation; and mRNA splicing, via spliceosome. Localizes to the nucleus. Human ortholog(s) of this gene implicated in myelodysplastic syndrome. Orthologous to human SF3B1 (splicing factor 3b subunit 1); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 3H-1,2-dithiole-3-thione; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Sap155; splicing factor 3B subunit 1; splicing factor 3b, subunit 1, 155kD
Orthologs:
Homo sapiens (human) : SF3B1 (splicing factor 3b subunit 1)  HGNC  Alliance
Mus musculus (house mouse) : Sf3b1 (splicing factor 3b, subunit 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sf3b1 (splicing factor 3b subunit 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SF3B1 (splicing factor 3b subunit 1)
Canis lupus familiaris (dog) : SF3B1 (splicing factor 3b subunit 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sf3b1 (splicing factor 3b subunit 1)
Sus scrofa (pig) : SF3B1 (splicing factor 3b subunit 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0961,594,620 - 61,634,510 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0961,274,727 - 61,315,726 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4953,796,176 - 53,837,297 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1953,814,990 - 53,838,594 (-)NCBI
Celera953,974,888 - 54,014,648 (-)NCBICelera
Cytogenetic Map9q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Sf3b1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620148
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.