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Gene: Pcdha4 (protocadherin alpha 4) Rattus norvegicus
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Symbol: Pcdha4
Name: protocadherin alpha 4
Description: Predicted to have calcium ion binding activity and identical protein binding activity. Predicted to be involved in cell adhesion. Predicted to localize to the endoplasmic reticulum; integral component of plasma membrane; and synapse. Orthologous to human PCDHA4 (protocadherin alpha 4); INTERACTS WITH 17alpha-ethynylestradiol; ammonium chloride; beta-naphthoflavone.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: cadherin-related neuronal receptor 1; cadherin-related neuronal receptor 10; cadherin-related neuronal receptor 11; cadherin-related neuronal receptor 12; cadherin-related neuronal receptor 13; cadherin-related neuronal receptor 2; cadherin-related neuronal receptor 4; cadherin-related neuronal receptor 5; cadherin-related neuronal receptor 6; cadherin-related neuronal receptor 7; cadherin-related neuronal receptor 8; cadherin-related neuronal receptor 9; cadherin-related neuronal receptor c1; cadherin-related neuronal receptor c2; Cnr1; cnr5; MGC93781; PCDH-alpha-4; Pcdha1; Pcdha10; Pcdha11; Pcdha12; Pcdha13; Pcdha2; Pcdha5; Pcdha6; Pcdha7; Pcdha8; Pcdha9; Pcdhac1; Pcdhac2; protocadherin alpha 1; protocadherin alpha 10; protocadherin alpha 11; protocadherin alpha 12; protocadherin alpha 13; protocadherin alpha 2; protocadherin alpha 5; protocadherin alpha 6; protocadherin alpha 7; protocadherin alpha 8; protocadherin alpha 9; protocadherin alpha c1; protocadherin alpha c2; protocadherin alpha-4; rCNRv01; rCNRv02; rCNRv05; rCNRv06; rCNRv07; rCNRv08; rCNRv09; rCNRv10; rCNRv11; rCNRv12; rCNRv13; rCNRvc1; rCNRvc2
Orthologs:
Homo sapiens (human) : PCDHA4 (protocadherin alpha 4)  HGNC  Alliance
Mus musculus (house mouse) : Pcdha4 (protocadherin alpha 4)  MGI  Alliance
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01829,950,217 - 30,215,901 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01829,670,058 - 29,924,443 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,683,478 - 29,928,030 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11829,710,123 - 29,954,676 (+)NCBI
Celera1828,311,641 - 28,552,754 (+)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Pcdha4
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620337
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.