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Gene: Slc1a6 (solute carrier family 1 member 6) Rattus norvegicus
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Symbol: Slc1a6
Name: solute carrier family 1 member 6
Description: Exhibits high-affinity glutamate transmembrane transporter activity. Involved in L-glutamate import across plasma membrane. Localizes to integral component of postsynaptic membrane; membrane protein complex; and parallel fiber to Purkinje cell synapse. Orthologous to human SLC1A6 (solute carrier family 1 member 6); PARTICIPATES IN glutamate signaling pathway; INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: EAAT4; excitatory amino acid transporter 4; high affinity aspartate/glutamate transporter; high-affinity neuronal glutamate transporter; MGC114297; sodium-dependent glutamate/aspartate transporter; solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
Orthologs:
Homo sapiens (human) : SLC1A6 (solute carrier family 1 member 6)  HGNC  Alliance
Mus musculus (house mouse) : Slc1a6 (solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Slc1a6 (solute carrier family 1 member 6)
Pan paniscus (bonobo/pygmy chimpanzee) : SLC1A6 (solute carrier family 1 member 6)
Canis lupus familiaris (dog) : SLC1A6 (solute carrier family 1 member 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Slc1a6 (solute carrier family 1 member 6)
Sus scrofa (pig) : SLC1A6 (solute carrier family 1 member 6)
Chlorocebus sabaeus (African green monkey) : SLC1A6 (solute carrier family 1 member 6)
Heterocephalus glaber (naked mole-rat) : Slc1a6 (solute carrier family 1 member 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0713,730,101 - 13,758,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl713,730,253 - 13,751,271 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0713,893,841 - 13,921,839 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4712,393,284 - 12,419,893 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1712,393,284 - 12,419,880 (-)NCBI
Celera78,958,917 - 8,988,056 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Slc1a6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620340
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.