Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Agps (alkylglycerone phosphate synthase) Rattus norvegicus
Analyze
Symbol: Agps
Name: alkylglycerone phosphate synthase
Description: Exhibits alkylglycerone-phosphate synthase activity. Predicted to be involved in ether lipid biosynthetic process. Localizes to the mitochondrion and peroxisome. Human ortholog(s) of this gene implicated in rhizomelic chondrodysplasia punctata and rhizomelic chondrodysplasia punctata type 3. Orthologous to human AGPS (alkylglycerone phosphate synthase); PARTICIPATES IN plasmalogen biosynthetic pathway; plasmalogen metabolic pathway; ether lipid metabolic pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Adap-s; Adps; Ads; alkyl-DHAP synthase; alkyl-dihydroxyacetonephosphate synthase; alkyl-dihydroxyacetonephosphate synthase precursor; alkyldihydroxyacetone phosphate synthase; alkyldihydroxyacetonephosphate synthase, peroxisomal; alkylglycerone phosphate synthase-like; alkylglycerone-phosphate synthase; LOC100360503
Orthologs:
Homo sapiens (human) : AGPS (alkylglycerone phosphate synthase)  HGNC  Alliance
Mus musculus (house mouse) : Agps (alkylglycerone phosphate synthase)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Agps (alkylglycerone phosphate synthase)
Pan paniscus (bonobo/pygmy chimpanzee) : AGPS (alkylglycerone phosphate synthase)
Canis lupus familiaris (dog) : AGPS (alkylglycerone phosphate synthase)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Agps (alkylglycerone phosphate synthase)
Sus scrofa (pig) : AGPS (alkylglycerone phosphate synthase)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0362,648,352 - 62,749,250 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl362,648,447 - 62,749,153 (+)Ensembl
Rnor_5.0369,193,349 - 69,296,169 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.1358,425,040 - 58,444,100 (+)NCBI
Celera360,248,210 - 60,345,456 (+)NCBICelera
Cytogenetic Map3q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Agps
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620364
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.