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Gene: Pax3 (paired box 3) Rattus norvegicus
Symbol: Pax3
Name: paired box 3
Description: Exhibits HMG box domain binding activity. Predicted to be involved in several processes, including animal organ development; nervous system development; and regulation of transcription by RNA polymerase II. Predicted to localize to nucleoplasm. Human ortholog(s) of this gene implicated in Waardenburg syndrome type 3; Waardenburg's syndrome; alveolar rhabdomyosarcoma; and craniofacial-deafness-hand syndrome. Orthologous to human PAX3 (paired box 3); INTERACTS WITH (S)-nicotine; aldehydo-D-glucose; all-trans-retinol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: homeodomain protein PAX3; paired box gene 3; paired box protein Pax-3
Homo sapiens (human) : PAX3 (paired box 3)  HGNC  Alliance
Mus musculus (house mouse) : Pax3 (paired box 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pax3 (paired box 3)
Pan paniscus (bonobo/pygmy chimpanzee) : PAX3 (paired box 3)
Canis lupus familiaris (dog) : PAX3 (paired box 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pax3 (paired box 3)
Sus scrofa (pig) : PAX3 (paired box 3)
Chlorocebus sabaeus (African green monkey) : PAX3 (paired box 3)
Heterocephalus glaber (naked mole-rat) : Pax3 (paired box 3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.0984,004,004 - 84,101,226 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl984,005,183 - 84,101,172 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0983,765,158 - 83,871,411 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4977,477,813 - 77,576,632 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1977,692,768 - 77,692,881 (-)NCBI
Celera977,080,699 - 77,176,237 (-)NCBICelera
Cytogenetic Map9q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Pax3
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620431
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.