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Gene: Sox5 (SRY-box transcription factor 5) Rattus norvegicus
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Symbol: Sox5
Name: SRY-box transcription factor 5
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific; protein heterodimerization activity; and transcription regulatory region DNA binding activity. Predicted to be involved in several processes, including neurogenesis; positive regulation of cell differentiation; and regulation of transcription, DNA-templated. Predicted to localize to the nuclear transcription factor complex. Orthologous to human SOX5 (SRY-box transcription factor 5); INTERACTS WITH (+)-schisandrin B; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Sox5l1; SRY (sex determining region Y)-box 5; SRY box 5; SRY-box containing gene 5; SRY-box containing gene 5-like 1; transcription factor SOX-5
Orthologs:
Homo sapiens (human) : SOX5 (SRY-box transcription factor 5)  HGNC  Alliance
Mus musculus (house mouse) : Sox5 (SRY (sex determining region Y)-box 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sox5 (SRY-box transcription factor 5)
Pan paniscus (bonobo/pygmy chimpanzee) : SOX5 (SRY-box transcription factor 5)
Canis lupus familiaris (dog) : SOX5 (SRY-box transcription factor 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sox5 (SRY-box transcription factor 5)
Sus scrofa (pig) : SOX5 (SRY-box transcription factor 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04178,062,267 - 179,031,991 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4178,066,165 - 178,441,547 (-)Ensembl
Rnor_5.04242,266,295 - 243,221,217 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44181,558,995 - 181,931,117 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14181,825,983 - 182,011,429 (-)NCBI
Celera4165,313,274 - 165,629,808 (-)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Sox5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620471
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.