Gene: Hoxa5 (homeo box A5) Rattus norvegicus
Symbol: Hoxa5
Name: homeo box A5
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); bronchiole development (ortholog); cartilage morphogenesis (ortholog); ASSOCIATED WITH Diaphragmatic Hernia (ortholog); Mouth Neoplasms (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleus (ortholog); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; all-trans-retinoic acid; ammonium chloride
Type: protein-coding
RefSeq Status: MODEL
Also known as: homeobox protein Hox-1.3; homeobox protein Hox-A5; homeobox protein Hox-A5-like; hox-1.3; LOC100909641; LOC100911546
Homo sapiens (human) : HOXA5 (homeobox A5)  HGNC  Alliance
Mus musculus (house mouse) : Hoxa5 (homeobox A5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxa5 (homeobox A5)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXA5 (homeobox A5)
Canis lupus familiaris (dog) : HOXA5 (homeobox A5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxa5 (homeobox A5)
Sus scrofa (pig) : HOXA5 (homeobox A5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_5.04146,837,214 - 146,841,619 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4480,501,675 - 80,504,626 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1480,779,823 - 80,781,740 (-)NCBI
Celera476,192,532 - 76,196,931 (-)NCBICelera
Cytogenetic Map4q24NCBI

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
miRNA Target Status


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
More on Hoxa5
Alliance Gene
Ensembl Gene
JBrowse: rn5
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620609
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.