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Gene: Hoxc6 (homeo box C6) Rattus norvegicus
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Symbol: Hoxc6
Name: homeo box C6
Description: Predicted to have RNA polymerase II distal enhancer sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and embryonic skeletal system development. Predicted to localize to the cytosol and nucleoplasm. Orthologous to human HOXC6 (homeobox C6); INTERACTS WITH amphetamine; bisphenol A; boric acid.
Type: protein-coding
RefSeq Status: MODEL
Also known as: homeobox protein Hox-C6
Orthologs:
Homo sapiens (human) : HOXC6 (homeobox C6)  HGNC  Alliance
Mus musculus (house mouse) : Hoxc6 (homeobox C6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxc6 (homeobox C6)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXC6 (homeobox C6)
Canis lupus familiaris (dog) : HOXC6 (homeobox C6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxc6 (homeobox C6)
Sus scrofa (pig) : HOXC6 (homeobox C6)
Chlorocebus sabaeus (green monkey) : HOXC6 (homeobox C6)
Heterocephalus glaber (naked mole-rat) : Hoxc6 (homeobox C6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07144,612,230 - 144,626,036 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,623,555 - 144,625,516 (+)Ensembl
Rnor_5.07142,406,437 - 142,417,393 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.17141,853,210 - 141,853,285 (+)NCBI
Celera7130,563,394 - 130,574,799 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Hoxc6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620626
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.