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Gene: Clic5 (chloride intracellular channel 5) Rattus norvegicus
Symbol: Clic5
Name: chloride intracellular channel 5
Description: Exhibits chloride channel activity. Predicted to be involved in several processes, including auditory receptor cell stereocilium organization; diet induced thermogenesis; and sensory perception of sound. Localizes to stereocilium bundle. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 103. Orthologous to human CLIC5 (chloride intracellular channel 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: chloride intracellular channel protein 5
Homo sapiens (human) : CLIC5 (chloride intracellular channel 5)  HGNC  Alliance
Mus musculus (house mouse) : Clic5 (chloride intracellular channel 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clic5 (chloride intracellular channel 5)
Pan paniscus (bonobo/pygmy chimpanzee) : CLIC5 (chloride intracellular channel 5)
Canis lupus familiaris (dog) : CLIC5 (chloride intracellular channel 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clic5 (chloride intracellular channel 5)
Sus scrofa (pig) : CLIC5 (chloride intracellular channel 5)
Chlorocebus sabaeus (African green monkey) : CLIC5 (chloride intracellular channel 5)
Heterocephalus glaber (naked mole-rat) : Clic5 (chloride intracellular channel 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.0919,121,676 - 19,372,673 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl919,121,677 - 19,372,673 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0918,004,699 - 18,049,825 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0918,203,018 - 18,251,818 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4912,370,341 - 12,472,969 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1912,367,663 - 12,470,290 (-)NCBI
Celera914,441,285 - 14,540,691 (-)NCBICelera
Cytogenetic Map9q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
More on Clic5
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620659
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.