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Gene: Barhl2 (BarH-like homeobox 2) Rattus norvegicus
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Symbol: Barhl2
Name: BarH-like homeobox 2
Description: Exhibits DNA-binding transcription factor activity. Involved in nervous system development and regulation of transcription by RNA polymerase II. Predicted to localize to the nucleus. Human ortholog(s) of this gene implicated in oral squamous cell carcinoma. Orthologous to human BARHL2 (BarH like homeobox 2); INTERACTS WITH ammonium chloride; bisphenol A; flavonoids.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: bar-class homeodomain protein MBH1; Barh; BarH-class homeodomain transcription factor; BarH-like 2 (Drosophila); barH-like 2 homeobox protein; homeobox protein B-H1; LOC65050; MBH1
Orthologs:
Homo sapiens (human) : BARHL2 (BarH like homeobox 2)  HGNC  Alliance
Mus musculus (house mouse) : Barhl2 (BarH like homeobox 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Barhl2 (BarH like homeobox 2)
Pan paniscus (bonobo/pygmy chimpanzee) : BARHL2 (BarH like homeobox 2)
Canis lupus familiaris (dog) : BARHL2 (BarH like homeobox 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Barhl2 (BarH like homeobox 2)
Sus scrofa (pig) : BARHL2 (BarH like homeobox 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0144,362,717 - 4,367,614 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0144,356,650 - 4,361,547 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4143,888,153 - 3,893,050 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1143,888,152 - 3,893,041 (+)NCBI
Celera143,342,723 - 3,347,622 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Barhl2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620726
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.