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Gene: Lmx1b (LIM homeobox transcription factor 1 beta) Rattus norvegicus
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Symbol: Lmx1b
Name: LIM homeobox transcription factor 1 beta
CRRD ID: 620843
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including collagen fibril organization; nervous system development; and trabecular meshwork development. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in nail-patella syndrome. Orthologous to human LMX1B (LIM homeobox transcription factor 1 beta); INTERACTS WITH (+)-schisandrin B; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LIM homeobox transcription factor 1-beta
Orthologs:
Homo sapiens (human) : LMX1B (LIM homeobox transcription factor 1 beta)  HGNC  Alliance
Mus musculus (house mouse) : Lmx1b (LIM homeobox transcription factor 1 beta)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lmx1b (LIM homeobox transcription factor 1 beta)
Pan paniscus (bonobo/pygmy chimpanzee) : LMX1B (LIM homeobox transcription factor 1 beta)
Canis lupus familiaris (dog) : LMX1B (LIM homeobox transcription factor 1 beta)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lmx1b (LIM homeobox transcription factor 1 beta)
Sus scrofa (pig) : LMX1B (LIM homeobox transcription factor 1 beta)
Chlorocebus sabaeus (African green monkey) : LMX1B (LIM homeobox transcription factor 1 beta)
Heterocephalus glaber (naked mole-rat) : Lmx1b (LIM homeobox transcription factor 1 beta)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0312,608,748 - 12,686,937 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl312,609,574 - 12,686,869 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0317,938,969 - 18,018,269 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4312,571,947 - 12,651,590 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1312,470,843 - 12,473,304 (-)NCBI
Celera311,596,841 - 11,674,265 (-)NCBICelera
Cytogenetic Map3p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Lmx1b
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620843
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.