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Gene: Gtf2ird1 (GTF2I repeat domain containing 1) Rattus norvegicus
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Symbol: Gtf2ird1
Name: GTF2I repeat domain containing 1
CRRD ID: 620856
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and transition between slow and fast fiber. Predicted to localize to cytosol and nucleoplasm. Orthologous to human GTF2IRD1 (GTF2I repeat domain containing 1); INTERACTS WITH (+)-schisandrin B; 3H-1,2-dithiole-3-thione; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: general transcription factor II I repeat domain-containing 1; general transcription factor II-I repeat domain-containing protein 1; Gtf3
Orthologs:
Homo sapiens (human) : GTF2IRD1 (GTF2I repeat domain containing 1)  HGNC  Alliance
Mus musculus (house mouse) : Gtf2ird1 (general transcription factor II I repeat domain-containing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Gtf2ird1 (GTF2I repeat domain containing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : GTF2IRD1 (GTF2I repeat domain containing 1)
Canis lupus familiaris (dog) : GTF2IRD1 (GTF2I repeat domain containing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Gtf2ird1 (GTF2I repeat domain containing 1)
Sus scrofa (pig) : GTF2IRD1 (GTF2I repeat domain containing 1)
Chlorocebus sabaeus (African green monkey) : GTF2IRD1 (GTF2I repeat domain containing 1)
Heterocephalus glaber (naked mole-rat) : Gtf2ird1 (GTF2I repeat domain containing 1)
more info ...
Is Marker For: Strains:   DA.ACI-(Gtf2ird1-D12Rat8)/Nsi  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01225,264,052 - 25,370,947 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,264,192 - 25,371,001 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,273,535 - 27,380,438 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41223,319,373 - 23,426,094 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1224,058,959 - 24,124,035 (+)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Gtf2ird1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620856
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.