Gene: Msx1 (msh homeobox 1) Rattus norvegicus
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Symbol: Msx1
Name: msh homeobox 1
Description: Predicted to have DNA-binding transcription factor activity, nucleic acid binding activity, and p53 binding activity; involved in cartilage development, cellular response to nicotine, and pituitary gland development; predicted to localize to the nucleoplasm and transcription factor complex; biomarker of cryptorchidism; orthologous to human MSX1 (msh homeobox 1); INTERACTS WITH (S)-nicotine; 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: homeo box, msh-like 1; homeobox protein MSX-1
Orthologs:
Homo sapiens (human) : MSX1 (msh homeobox 1)  HGNC  Alliance
Mus musculus (house mouse) : Msx1 (msh homeobox 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Msx1 (msh homeobox 1)
Pan paniscus (bonobo/pygmy chimpanzee) : MSX1 (msh homeobox 1)
Canis lupus familiaris (dog) : MSX1 (msh homeobox 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Msx1 (msh homeobox 1)
Sus scrofa (pig) : MSX1 (msh homeobox 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01477,712,262 - 77,716,061 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01477,690,990 - 77,694,789 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41478,257,345 - 78,261,144 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11478,259,735 - 78,263,533 (+)NCBI
Celera1471,923,586 - 71,927,385 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Msx1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 620929
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.