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Gene: Opn1sw (opsin 1, short wave sensitive) Rattus norvegicus
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Symbol: Opn1sw
Name: opsin 1, short wave sensitive
Description: Predicted to have G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Localizes to the cell body; photoreceptor outer segment; and terminal bouton. Human ortholog(s) of this gene implicated in blue color blindness. Orthologous to human OPN1SW (opsin 1, short wave sensitive); PARTICIPATES IN retinoid cycle metabolic pathway; visual phototransduction pathway; INTERACTS WITH ammonium chloride; bisphenol A; benzo[a]pyrene (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: blue cone opsin-like pigment; blue cone photoreceptor pigment; blue-sensitive opsin; BOP; opsin 1 (cone pigments), short-wave-sensitive; opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan); s opsin; short wavelength-sensitive cone opsin; short-wave-sensitive opsin 1
Orthologs:
Homo sapiens (human) : OPN1SW (opsin 1, short wave sensitive)  HGNC  Alliance
Mus musculus (house mouse) : Opn1sw (opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Opn1sw (opsin 1, short wave sensitive)
Pan paniscus (bonobo/pygmy chimpanzee) : OPN1SW (opsin 1, short wave sensitive)
Canis lupus familiaris (dog) : OPN1SW (opsin 1, short wave sensitive)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Opn1sw (opsin 1, short wave sensitive)
Sus scrofa (pig) : OPN1SW (opsin 1, short wave sensitive)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0456,653,840 - 56,656,980 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0456,421,001 - 56,424,141 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,256,846 - 56,259,986 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1456,512,971 - 56,516,112 (-)NCBI
Celera453,085,329 - 53,088,469 (-)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Opn1sw
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 621033
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.