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Gene: Ybx3 (Y box binding protein 3) Rattus norvegicus
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Symbol: Ybx3
Name: Y box binding protein 3
Description: Exhibits single-stranded DNA binding activity. Involved in animal organ regeneration; negative regulation of transcription by RNA polymerase II; and spermatogenesis. Localizes to the gap junction and nucleus. Orthologous to human YBX3 (Y-box binding protein 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: cold shock domain protein A; cold shock domain-containing protein A; Csda; Dbpa; DNA-binding protein A; MGC124554; muscle Y-box protein YB2; RYB-A; Y-box-binding protein 3; Y-box-binding protein A; Yb2
Orthologs:
Homo sapiens (human) : YBX3 (Y-box binding protein 3)  HGNC  Alliance
Mus musculus (house mouse) : Ybx3 (Y box protein 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ybx3 (Y-box binding protein 3)
Pan paniscus (bonobo/pygmy chimpanzee) : YBX3 (Y-box binding protein 3)
Canis lupus familiaris (dog) : YBX3 (Y-box binding protein 3)
Sus scrofa (pig) : YBX3 (Y-box binding protein 3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04165,606,819 - 165,630,041 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04228,170,272 - 228,193,525 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44169,076,517 - 169,099,849 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14169,321,476 - 169,344,762 (-)NCBI
Celera4153,733,515 - 153,756,519 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Ybx3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 621056
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.