Gene: Vax1 (ventral anterior homeobox 1) Rattus norvegicus
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Symbol: Vax1
Name: ventral anterior homeobox 1
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific, RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding activity, and chromatin DNA binding activity; predicted to be involved in several processes, including animal organ development, negative regulation of transcription by RNA polymerase II, and nervous system development; predicted to localize to the nucleus; orthologous to human VAX1 (ventral anterior homeobox 1); INTERACTS WITH 6-propyl-2-thiouracil; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ventral anterior homeobox containing gene 1
Orthologs:
Homo sapiens (human) : VAX1 (ventral anterior homeobox 1)  HGNC  Alliance
Mus musculus (house mouse) : Vax1 (ventral anterior homeobox 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vax1 (ventral anterior homeobox 1)
Pan paniscus (bonobo/pygmy chimpanzee) : VAX1 (ventral anterior homeobox 1)
Canis lupus familiaris (dog) : VAX1 (ventral anterior homeobox 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vax1 (ventral anterior homeobox 1)
Sus scrofa (pig) : VAX1 (ventral anterior homeobox 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01280,334,897 - 280,338,813 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01287,695,646 - 287,699,562 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41265,699,404 - 265,703,320 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11265,910,448 - 265,914,365 (-)NCBI
Celera1253,980,379 - 253,984,299 (-)NCBICelera
Cytogenetic Map1q55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Vax1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 621132
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.