Gene: Clstn2 (calsyntenin 2) Rattus norvegicus
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Symbol: Clstn2
Name: calsyntenin 2
Description: Predicted to have calcium ion binding activity; predicted to be involved in positive regulation of synapse assembly and positive regulation of synaptic transmission; localizes to the postsynaptic membrane; orthologous to human CLSTN2 (calsyntenin 2); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: alc-gamma; alcadein-gamma; calsyntenin-2; Cs2; Cstn2; LOC100359585
Orthologs:
Homo sapiens (human) : CLSTN2 (calsyntenin 2)  HGNC  Alliance
Mus musculus (house mouse) : Clstn2 (calsyntenin 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clstn2 (calsyntenin 2)
Pan paniscus (bonobo/pygmy chimpanzee) : CLSTN2 (calsyntenin 2)
Canis lupus familiaris (dog) : CLSTN2 (calsyntenin 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clstn2 (calsyntenin 2)
Sus scrofa (pig) : CLSTN2 (calsyntenin 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: spans an assembly gap
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08105,322,577 - 106,036,821 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08104,768,386 - 104,906,597 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48102,614,117 - 103,214,037 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18102,633,571 - 103,233,492 (-)NCBI
Celera897,454,425 - 98,063,036 (-)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Clstn2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 621151
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.