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Gene: Fcna (ficolin A) Rattus norvegicus
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Symbol: Fcna
Name: ficolin A
CRRD ID: 621221
Description: Predicted to have several functions, including antigen binding activity; carbohydrate derivative binding activity; and pattern recognition receptor activity. Predicted to be involved in several processes, including activation of immune response; positive regulation of interleukin-8 production; and recognition of apoptotic cell. Predicted to localize to collagen-containing extracellular matrix; extracellular space; and extrinsic component of external side of plasma membrane. Orthologous to human FCN3 (ficolin 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: collagen/fibrinogen domain-containing protein 1; Fcn1; ficolin (collagen/fibrinogen domain containing) 1; ficolin-1; ficolin-A; ficolin-alpha; M-ficolin; MGC108660
Orthologs:
Homo sapiens (human) : FCN3 (ficolin 3)  HGNC  Alliance
Mus musculus (house mouse) : Fcna (ficolin A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Fcn3 (ficolin 3)
Pan paniscus (bonobo/pygmy chimpanzee) : FCN3 (ficolin 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Fcn3 (ficolin 3)
Sus scrofa (pig) : FCN1 (ficolin (collagen/fibrinogen domain containing) 1)
Chlorocebus sabaeus (African green monkey) : FCN3 (ficolin 3)
Heterocephalus glaber (naked mole-rat) : Fcn3 (ficolin 3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.032,850,006 - 2,853,230 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,849,984 - 2,853,272 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,831,419 - 2,834,620 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,797,916 - 3,801,117 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.133,797,915 - 3,801,117 (-)NCBI
Celera33,270,846 - 3,274,047 (-)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Fcna
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 621221
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.