Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Vti1a (vesicle transport through interaction with t-SNAREs 1A) Rattus norvegicus
Analyze
Symbol: Vti1a
Name: vesicle transport through interaction with t-SNAREs 1A
Description: Predicted to have SNAP receptor activity and SNARE binding activity. Involved in endoplasmic reticulum to Golgi vesicle-mediated transport; synaptic vesicle to endosome fusion; and vesicle fusion with Golgi apparatus. Localizes to the cytoplasm; neuron projection terminus; and neuronal cell body. Orthologous to human VTI1A (vesicle transport through interaction with t-SNAREs 1A); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: SNARE Vti1a-beta protein; vesicle transport through interaction with t-SNAREs homolog 1A; vesicle transport through interaction with t-SNAREs homolog 1A (yeast); vesicle transport v-SNARE protein Vti1-like 2; Vti1; Vti1-pending; vti1-rp2
Orthologs:
Allele / Splice: Vti1a_v1   Vti1a_v2  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: suggests misassembly; Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01276,310,072 - 276,508,635 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01283,705,427 - 283,902,980 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41261,664,003 - 261,905,744 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11261,875,047 - 262,116,789 (+)NCBI
Celera1250,063,252 - 250,364,895 (+)NCBICelera
Cytogenetic Map1q55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Vti1a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 621490
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.