Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Ssbp3 (single stranded DNA binding protein 3) Rattus norvegicus
Analyze
Symbol: Ssbp3
Name: single stranded DNA binding protein 3
Description: Predicted to have single-stranded DNA binding activity. Predicted to be involved in several processes, including head morphogenesis; nervous system development; and positive regulation of anterior head development. Predicted to localize to nucleus and transcription regulator complex. Orthologous to human SSBP3 (single stranded DNA binding protein 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC102549605; MGC124589; sequence-specific single-stranded-DNA-binding protein; single-stranded DNA-binding protein 3; Ssdp; Ssdp3; uncharacterized LOC102549605
Orthologs:
Homo sapiens (human) : SSBP3 (single stranded DNA binding protein 3)  HGNC  Alliance
Mus musculus (house mouse) : Ssbp3 (single-stranded DNA binding protein 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ssbp3 (single stranded DNA binding protein 3)
Pan paniscus (bonobo/pygmy chimpanzee) : SSBP3 (single stranded DNA binding protein 3)
Canis lupus familiaris (dog) : SSBP3 (single stranded DNA binding protein 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ssbp3 (single stranded DNA binding protein 3)
Sus scrofa (pig) : SSBP3 (single stranded DNA binding protein 3)
Chlorocebus sabaeus (African green monkey) : SSBP3 (single stranded DNA binding protein 3)
Heterocephalus glaber (naked mole-rat) : Ssbp3 (single stranded DNA binding protein 3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05126,511,339 - 126,649,830 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5126,511,350 - 126,648,661 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05130,364,154 - 130,500,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45127,987,980 - 128,127,771 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15127,993,205 - 128,132,997 (+)NCBI
Celera5120,438,879 - 120,575,397 (+)NCBICelera
Cytogenetic Map5q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Ssbp3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 621502
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-07-28
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.