Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Phf5a (PHD finger protein 5A) Rattus norvegicus
Analyze
Symbol: Phf5a
Name: PHD finger protein 5A
Description: Exhibits DNA-binding transcription factor activity. Involved in positive regulation of transcription, DNA-templated. Predicted to localize to the nucleus. Orthologous to human PHF5A (PHD finger protein 5A); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,4,6-trinitrotoluene; 2,6-dinitrotoluene; aflatoxin B1.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Ac2-246; Loc192246; PHD finger-like domain protein 5A; PHD finger-like domain-containing protein 5A; SF3b14b; splicing factor 3B-associated 14 kDa protein; transcription factor INI
Orthologs:
Homo sapiens (human) : PHF5A (PHD finger protein 5A)  HGNC  Alliance
Mus musculus (house mouse) : Phf5a (PHD finger protein 5A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Phf5a (PHD finger protein 5A)
Pan paniscus (bonobo/pygmy chimpanzee) : PHF5A (PHD finger protein 5A)
Canis lupus familiaris (dog) : PHF5A (PHD finger protein 5A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Phf5a (PHD finger protein 5A)
Sus scrofa (pig) : PHF5A (PHD finger protein 5A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07123,095,286 - 123,101,851 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,095,288 - 123,101,869 (-)Ensembl
Rnor_5.07123,070,681 - 123,077,246 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47120,216,581 - 120,223,146 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17120,250,812 - 120,257,376 (-)NCBI
Celera7109,697,147 - 109,703,712 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Phf5a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 621555
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.