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Gene: Ythdc1 (YTH domain containing 1) Rattus norvegicus
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Symbol: Ythdc1
Name: YTH domain containing 1
Description: Exhibits N6-methyladenosine-containing RNA binding activity. Involved in mRNA splicing, via spliceosome. Localizes to the nuclear body. Orthologous to human YTHDC1 (YTH domain containing 1); INTERACTS WITH 2,4-dinitrotoluene; 3H-1,2-dithiole-3-thione; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: putative splicing factor YT521; RA301-binding protein; splicing factor YT521; splicing factor YT521-B; Yt521; YTH domain-containing protein 1
Orthologs:
Homo sapiens (human) : YTHDC1 (YTH domain containing 1)  HGNC  Alliance
Mus musculus (house mouse) : Ythdc1 (YTH domain containing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ythdc1 (YTH domain containing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : YTHDC1 (YTH domain containing 1)
Canis lupus familiaris (dog) : YTHDC1 (YTH domain containing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ythdc1 (YTH domain containing 1)
Sus scrofa (pig) : YTHDC1 (YTH domain containing 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01422,971,834 - 23,002,326 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01422,869,117 - 22,899,637 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41422,805,108 - 22,835,283 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11422,805,107 - 22,835,283 (-)NCBI
Celera1420,678,761 - 20,708,683 (-)NCBICelera
Cytogenetic Map14p21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Ythdc1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 621706
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.