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Gene: Oat (ornithine aminotransferase) Rattus norvegicus
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Symbol: Oat
Name: ornithine aminotransferase
Description: Predicted to have ornithine-oxo-acid transaminase activity and pyridoxal phosphate binding activity. Predicted to be involved in arginine catabolic process to glutamate; arginine catabolic process to proline via ornithine; and protein hexamerization. Localizes to the mitochondrion. Human ortholog(s) of this gene implicated in gyrate atrophy. Orthologous to human OAT (ornithine aminotransferase); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; guanidinoacetate methyltransferase deficiency pathway; INTERACTS WITH (+)-schisandrin B; (RS)-amphetamine; 1,2,4-trimethylbenzene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ornithine aminotransferase (gyrate atrophy); ornithine aminotransferase, mitochondrial; ornithine--oxo-acid aminotransferase; rOAT
Orthologs:
Homo sapiens (human) : OAT (ornithine aminotransferase)  HGNC  Alliance
Mus musculus (house mouse) : Oat (ornithine aminotransferase)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Oat (ornithine aminotransferase)
Pan paniscus (bonobo/pygmy chimpanzee) : OAT (ornithine aminotransferase)
Canis lupus familiaris (dog) : OAT (ornithine aminotransferase)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Oat (ornithine aminotransferase)
Sus scrofa (pig) : OAT (ornithine aminotransferase)
more info ...
Related Pseudogenes: Slc22a7-ps1  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01204,562,289 - 204,582,070 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1204,562,289 - 204,582,070 (-)Ensembl
Rnor_5.01211,555,927 - 211,575,708 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41192,026,623 - 192,046,404 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11192,176,503 - 192,196,285 (-)NCBI
Celera1185,092,131 - 185,111,563 (-)NCBICelera
Cytogenetic Map1q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Oat
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 621724
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.