Gene: Snx27 (sorting nexin family member 27) Rattus norvegicus
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Symbol: Snx27
Name: sorting nexin family member 27
Description: Exhibits ionotropic glutamate receptor binding activity and phosphatidylinositol-3-phosphate binding activity; involved in several processes, including cellular response to nerve growth factor stimulus, endosome to plasma membrane protein transport, and negative regulation of inward rectifier potassium channel activity; localizes to the cytoplasm, plasma membrane, and postsynaptic density; predicted to colocalize with the WASH complex and retromer complex; orthologous to human SNX27 (sorting nexin family member 27); PARTICIPATES IN retromer-mediated pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: MAP-responsive gene protein; methamphetamine (MAP) responsive transcript 1; methamphetamine-responsive transcript 1 protein; Mrt1; PDZ protein Mrt1; PDZ-protein Mrt1; sorting nexin-27
Orthologs:
Homo sapiens (human) : SNX27 (sorting nexin 27)  HGNC  Alliance
Mus musculus (house mouse) : Snx27 (sorting nexin family member 27)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Snx27 (sorting nexin 27)
Pan paniscus (bonobo/pygmy chimpanzee) : SNX27 (sorting nexin 27)
Canis lupus familiaris (dog) : SNX27 (sorting nexin 27)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Snx27 (sorting nexin 27)
Sus scrofa (pig) : SNX27 (sorting nexin 27)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02195,738,613 - 195,821,608 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02215,217,238 - 215,300,226 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42189,471,254 - 189,554,249 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12189,421,366 - 189,507,587 (-)NCBI
Celera2174,686,309 - 174,766,065 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Snx27
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 628705
Created: 2003-02-27
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.