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Gene: Vps54 (VPS54 subunit of GARP complex) Rattus norvegicus
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Symbol: Vps54
Name: VPS54 subunit of GARP complex
Description: Predicted to have syntaxin binding activity. Predicted to be involved in several processes, including Golgi to vacuole transport; neurofilament cytoskeleton organization; and retrograde transport, endosome to Golgi. Localizes to the trans-Golgi network. Orthologous to human VPS54 (VPS54 subunit of GARP complex); INTERACTS WITH (RS)-amphetamine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: vacuolar protein sorting 54 (yeast); vacuolar protein sorting 54 homolog; vacuolar protein sorting 54 homolog (S. cerevisiae); vacuolar protein sorting-associated protein 54; VPS54 GARP complex subunit; Vps54-like; Vsp54
Orthologs:
Homo sapiens (human) : VPS54 (VPS54 subunit of GARP complex)  HGNC  Alliance
Mus musculus (house mouse) : Vps54 (VPS54 GARP complex subunit)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vps54 (VPS54 subunit of GARP complex)
Pan paniscus (bonobo/pygmy chimpanzee) : VPS54 (VPS54 subunit of GARP complex)
Canis lupus familiaris (dog) : VPS54 (VPS54 subunit of GARP complex)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vps54 (VPS54 subunit of GARP complex)
Sus scrofa (pig) : VPS54 (VPS54 subunit of GARP complex)
more info ...
Related Pseudogenes: Vps54-ps1  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.014106,153,407 - 106,207,715 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.014106,220,200 - 106,274,489 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414102,018,126 - 102,072,258 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.114102,037,336 - 102,091,469 (+)NCBI
Celera1494,414,915 - 94,468,850 (+)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Vps54
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 628718
Created: 2003-02-27
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.