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Gene: Casc3 (CASC3 exon junction complex subunit) Rattus norvegicus
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Symbol: Casc3
Name: CASC3 exon junction complex subunit
Description: Predicted to have identical protein binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in intracellular mRNA localization and mRNA splicing, via spliceosome. Predicted to localize to the cytoplasm and nucleus. Orthologous to human CASC3 (CASC3 exon junction complex subunit); PARTICIPATES IN mRNA decay pathway; RNA transport pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Barentsz; Btz; cancer susceptibility 3; cancer susceptibility candidate 3; cancer susceptibility candidate gene 3 protein homolog; metastatic lymph node 51; Mln51
Orthologs:
Homo sapiens (human) : CASC3 (CASC3 exon junction complex subunit)  HGNC  Alliance
Mus musculus (house mouse) : Casc3 (cancer susceptibility candidate 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Casc3 (CASC3 exon junction complex subunit)
Pan paniscus (bonobo/pygmy chimpanzee) : CASC3 (CASC3 exon junction complex subunit)
Canis lupus familiaris (dog) : CASC3 (CASC3 exon junction complex subunit)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Casc3 (CASC3 exon junction complex subunit)
Sus scrofa (pig) : CASC3 (CASC3 exon junction complex subunit)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01086,724,534 - 86,744,485 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01086,520,779 - 86,540,730 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41087,581,850 - 87,602,528 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11087,596,219 - 87,616,898 (+)NCBI
Celera1082,516,863 - 82,536,588 (+)NCBICelera
Cytogenetic Map10q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Casc3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 628766
Created: 2003-02-27
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.