Gene: Ush2a (usherin) Rattus norvegicus
Analyze
Symbol: Ush2a
Name: usherin
Description: Predicted to have collagen binding activity, myosin binding activity, and protein homodimerization activity; involved in retina development in camera-type eye; localizes to the stereocilium and synapse; colocalizes with the neuron projection, neuronal cell body, and photoreceptor inner segment; orthologous to human USH2A (usherin); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; INTERACTS WITH 1-naphthyl isothiocyanate; ammonium chloride; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC289369; RGD1560269; similar to usherin isoform B; Usher syndrome 2A; Usher syndrome 2A (autosomal recessive, mild); Usher syndrome 2A (autosomal recessive, mild) homolog; Usher syndrome 2A (autosomal recessive, mild) homolog (human); Usher syndrome 2A homolog; Usher syndrome 2A homolog (human); usher syndrome type IIa protein homolog; usher syndrome type-2A protein homolog
Orthologs:
Homo sapiens (human) : USH2A (usherin)  HGNC  Alliance
Mus musculus (house mouse) : Ush2a (usherin)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ush2a (usherin)
Pan paniscus (bonobo/pygmy chimpanzee) : USH2A (usherin)
Canis lupus familiaris (dog) : USH2A (usherin)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ush2a (usherin)
Sus scrofa (pig) : USH2A (usherin)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.013106,750,738 - 107,434,195 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013111,395,505 - 112,057,548 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413104,481,807 - 104,606,485 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.113104,670,849 - 104,795,529 (+)NCBI
Celera1399,331,812 - 99,994,577 (+)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)