Gene: Clrn1 (clarin 1) Rattus norvegicus
Symbol: Clrn1
Name: clarin 1
Description: Predicted to be involved in several processes, including actin filament organization, auditory receptor cell stereocilium organization, and cell motility; predicted to colocalize with the microtubule; used to study retinitis pigmentosa; orthologous to human CLRN1 (clarin 1); PARTICIPATES IN retinitis pigmentosa pathway; INTERACTS WITH 6-propyl-2-thiouracil; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: clarin-1; Ush3; Ush3a; Usher syndrome 3A homolog; Usher syndrome 3A homolog (human); Usher syndrome type III A; usher syndrome type-3 protein homolog
Homo sapiens (human) : CLRN1 (clarin 1)  HGNC  Alliance
Mus musculus (house mouse) : Clrn1 (clarin 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clrn1 (clarin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CLRN1 (clarin 1)
Canis lupus familiaris (dog) : CLRN1 (clarin 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clrn1 (clarin 1)
Sus scrofa (pig) : CLRN1 (clarin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.02149,049,925 - 149,088,787 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02168,473,047 - 168,511,371 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42148,193,633 - 148,243,575 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12148,143,595 - 148,163,994 (-)NCBI
Celera2137,511,773 - 137,558,813 (-)NCBICelera
Cytogenetic Map2q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
More on Clrn1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 628779
Created: 2003-02-27
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.