Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Clrn1 (clarin 1) Rattus norvegicus
Analyze
Symbol: Clrn1
Name: clarin 1
Description: Predicted to be involved in several processes, including auditory receptor cell stereocilium organization; photoreceptor cell maintenance; and positive regulation of lamellipodium assembly. Predicted to colocalize with microtubule. Used to study retinitis pigmentosa. Human ortholog(s) of this gene implicated in Usher syndrome type 3A and retinitis pigmentosa 61. Orthologous to human CLRN1 (clarin 1); PARTICIPATES IN retinitis pigmentosa pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: clarin-1; Ush3; Ush3a; Usher syndrome 3A homolog; Usher syndrome 3A homolog (human); Usher syndrome type III A; usher syndrome type-3 protein homolog
Orthologs:
Homo sapiens (human) : CLRN1 (clarin 1)  HGNC  Alliance
Mus musculus (house mouse) : Clrn1 (clarin 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clrn1 (clarin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CLRN1 (clarin 1)
Canis lupus familiaris (dog) : CLRN1 (clarin 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clrn1 (clarin 1)
Sus scrofa (pig) : CLRN1 (clarin 1)
Chlorocebus sabaeus (African green monkey) : CLRN1 (clarin 1)
Heterocephalus glaber (naked mole-rat) : Clrn1 (clarin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02149,049,925 - 149,088,787 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2149,049,925 - 149,088,787 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02168,473,047 - 168,511,371 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42148,193,633 - 148,243,575 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12148,143,595 - 148,163,994 (-)NCBI
Celera2137,511,773 - 137,558,813 (-)NCBICelera
Cytogenetic Map2q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Clrn1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 628779
Created: 2003-02-27
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.