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Gene: Clrn1 (clarin 1) Rattus norvegicus
Symbol: Clrn1
Name: clarin 1
Description: Predicted to be involved in several processes, including auditory receptor cell stereocilium organization; photoreceptor cell maintenance; and positive regulation of lamellipodium assembly. Predicted to colocalize with microtubule. Used to study retinitis pigmentosa. Human ortholog(s) of this gene implicated in Usher syndrome type 3A and retinitis pigmentosa 61. Orthologous to human CLRN1 (clarin 1); PARTICIPATES IN retinitis pigmentosa pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: clarin-1; Ush3; Ush3a; Usher syndrome 3A homolog; Usher syndrome 3A homolog (human); Usher syndrome type III A; usher syndrome type-3 protein homolog
Homo sapiens (human) : CLRN1 (clarin 1)  HGNC  Alliance
Mus musculus (house mouse) : Clrn1 (clarin 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clrn1 (clarin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CLRN1 (clarin 1)
Canis lupus familiaris (dog) : CLRN1 (clarin 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clrn1 (clarin 1)
Sus scrofa (pig) : CLRN1 (clarin 1)
Chlorocebus sabaeus (African green monkey) : CLRN1 (clarin 1)
Heterocephalus glaber (naked mole-rat) : Clrn1 (clarin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.02149,049,925 - 149,088,787 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2149,049,925 - 149,088,787 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02168,473,047 - 168,511,371 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42148,193,633 - 148,243,575 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12148,143,595 - 148,163,994 (-)NCBI
Celera2137,511,773 - 137,558,813 (-)NCBICelera
Cytogenetic Map2q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Clrn1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 628779
Created: 2003-02-27
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.