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Gene: Atf5 (activating transcription factor 5) Rattus norvegicus
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Symbol: Atf5
Name: activating transcription factor 5
CRRD ID: 628902
Description: Exhibits several functions, including DNA-binding transcription factor activity; chromatin binding activity; and heat shock protein binding activity. Involved in negative regulation of apoptotic process; negative regulation of astrocyte differentiation; and positive regulation of transcription, DNA-templated. Localizes to nucleus. Orthologous to human ATF5 (activating transcription factor 5); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: cAMP-dependent transcription factor ATF-5; cyclic AMP-dependent transcription factor ATF-5; transcription factor ATFx
Orthologs:
Homo sapiens (human) : ATF5 (activating transcription factor 5)  HGNC  Alliance
Mus musculus (house mouse) : Atf5 (activating transcription factor 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atf5 (activating transcription factor 5)
Pan paniscus (bonobo/pygmy chimpanzee) : ATF5 (activating transcription factor 5)
Canis lupus familiaris (dog) : ATF5 (activating transcription factor 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atf5 (activating transcription factor 5)
Sus scrofa (pig) : ATF5 (activating transcription factor 5)
Chlorocebus sabaeus (African green monkey) : ATF5 (activating transcription factor 5)
Heterocephalus glaber (naked mole-rat) : Atf5 (activating transcription factor 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01100,807,821 - 100,812,410 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,808,241 - 100,810,522 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01101,872,584 - 101,876,673 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,284,505 - 95,286,786 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1195,362,195 - 95,366,285 (-)NCBI
Celera189,558,041 - 89,560,322 (-)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Atf5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 628902
Created: 2003-02-27
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.