Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Otop1 (otopetrin 1) Rattus norvegicus
Analyze
Symbol: Otop1
Name: otopetrin 1
Description: Predicted to have proton channel activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; detection of gravity; and negative regulation of interferon-gamma-mediated signaling pathway. Predicted to localize to the integral component of plasma membrane. Orthologous to human OTOP1 (otopetrin 1); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: otopetrin-1; proton channel OTOP1
Orthologs:
Homo sapiens (human) : OTOP1 (otopetrin 1)  HGNC  Alliance
Mus musculus (house mouse) : Otop1 (otopetrin 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Otop1 (otopetrin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : OTOP1 (otopetrin 1)
Canis lupus familiaris (dog) : OTOP1 (otopetrin 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Otop1 (otopetrin 1)
Sus scrofa (pig) : OTOP1 (otopetrin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01477,236,278 - 77,263,729 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01477,217,741 - 77,245,192 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41477,784,515 - 77,811,966 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11477,786,905 - 77,814,357 (-)NCBI
Celera1471,456,163 - 71,483,694 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Otop1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 631389
Created: 2003-08-13
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.