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Gene: Rtl9 (retrotransposon Gag like 9) Rattus norvegicus
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Symbol: Rtl9
Name: retrotransposon Gag like 9
CRRD ID: 6486824
Description: Orthologous to human RTL9 (retrotransposon Gag like 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1 (ortholog); benzo[a]pyrene (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC100912526; retrotransposon gag domain containing 1; retrotransposon gag domain-containing protein 1; retrotransposon gag domain-containing protein 1-like; Rgag1
Orthologs:
Homo sapiens (human) : RTL9 (retrotransposon Gag like 9)  HGNC  Alliance
Mus musculus (house mouse) : Rtl9 (retrotransposon Gag like 9)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rtl9 (retrotransposon Gag like 9)
Pan paniscus (bonobo/pygmy chimpanzee) : RTL9 (retrotransposon Gag like 9)
Canis lupus familiaris (dog) : RTL9 (retrotransposon Gag like 9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rtl9 (retrotransposon Gag like 9)
Sus scrofa (pig) : RTL9 (retrotransposon Gag like 9)
Chlorocebus sabaeus (African green monkey) : RTL9 (retrotransposon Gag like 9)
Heterocephalus glaber (naked mole-rat) : Rtl9 (retrotransposon Gag like 9)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X114,367,028 - 114,379,646 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX114,373,907 - 114,378,622 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X112,814,249 - 112,826,297 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX106,118,589 - 106,131,207 (+)NCBICelera
Cytogenetic MapXq33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Rtl9
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 6486824
Created: 2012-07-05
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.