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Gene: LOC100911453 (methylosome protein 50-like) Rattus norvegicus
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Symbol: LOC100911453
Name: methylosome protein 50-like
CRRD ID: 6492663
Description: Predicted to have methyl-CpG binding activity. Predicted to be involved in positive regulation of nucleic acid-templated transcription. Predicted to localize to cytosol; methylosome; and nucleus. Orthologous to human WDR77 (WD repeat domain 77).
Type: protein-coding
RefSeq Status: MODEL
Also known as: methylosome protein 50
Orthologs:
No known orthologs. homologs ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Note: LOC100911453 appears to be a duplicate placement of Wdr77 (GeneID: 310769) on Rnor_6.0 that is not present on Rn_Celera (Annotation Release 105) and not supported by synteny in mouse and human. Additionally, gene neighbor LOC100911417 appears to be a duplicate placement of Atp5f1 (Gene ID: 171375). BLASTing LOC100911453 XM_003749373.3 and Wdr77 NM_001008771.3 against the rat genome shows best hits to NC_005101.4 on Rnor_6.0 at locations where LOC100911453 and Wdr77 are annotated and to AC_000070.1 on Rn_Celera only at location where Wdr77 is annotated (Annotation Release 105). 2-sequence BLAST of Wdr77 NM_001008771.3 against LOC100911453 XM_003749373.3 shows high sequence identity (99% coverage, 99% identity). BLASTing LOC100911453 underlying component AABR07012780.1 against the rat genome shows best hits to NC_005101.4 on Rnor_6.0 at the location where LOC100911453 is annotated (hitting itself) and the location where Wdr77 is annotated. 2-sequence BLAST of LOC100911453 underlying component AABR07012780.1 against Wdry77 underlying component AABR07012786.1 shows 99% sequence identity across ~14 kb stretch. [25 Mar 2015]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02208,420,223 - 208,430,276 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2208,420,309 - 208,587,260 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl2208,420,206 - 208,586,356 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02227,841,698 - 227,851,766 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated

Genomics

Position Markers
QTLs in Region (Rnor_6.0)

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on LOC100911453
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 6492663
Created: 2012-07-05
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.