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Gene: LOC100911204 (protein CASC5-like) Rattus norvegicus
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Symbol: LOC100911204
Name: protein CASC5-like
CRRD ID: 6494213
Description: Predicted to be involved in attachment of spindle microtubules to kinetochore; negative regulation of phosphatase activity; and protein localization to kinetochore. Predicted to localize to acrosomal vesicle; condensed chromosome kinetochore; and nuclear body. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly and primary autosomal recessive microcephaly 4. Orthologous to human KNL1 (kinetochore scaffold 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 3,7-dihydropurine-6-thione.
Type: protein-coding
RefSeq Status: MODEL
Orthologs:
Homo sapiens (human) : KNL1 (kinetochore scaffold 1)  HGNC  Alliance
Sus scrofa (pig) : KNL1 (kinetochore scaffold 1)
Chlorocebus sabaeus (African green monkey) : KNL1 (kinetochore scaffold 1)
Heterocephalus glaber (naked mole-rat) : Knl1 (kinetochore scaffold 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03112,531,429 - 112,560,698 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3112,531,703 - 112,560,634 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,076,361 - 119,105,383 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on LOC100911204
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 6494213
Created: 2012-07-05
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.