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Gene: Trnat-agu (transfer RNA threonine (anticodon AGU)) Rattus norvegicus
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Symbol: Trnat-agu
Name: transfer RNA threonine (anticodon AGU)
Description: This record serves to anchor the annotation of tRNAs of this class on the rat genome. The placement is predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).[provided by RefSeq, May 2010]
Type: trna
RefSeq Status: MODEL
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Note: This tRNA anchor locus is annotated at 7 distinct locations on the reference assembly in Rattus norvegicus Annotation Release 105, which are not displayed in Gene. The complete set of locations can be downloaded from the annotation files provided at ftp://ftp.ncbi.nih.gov/genomes/Rattus_norvegicus [19 Aug 2014]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0191,486,515 - 91,486,588 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01055,618,144 - 55,618,217 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01055,697,046 - 55,697,119 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01055,645,036 - 55,645,109 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01744,534,669 - 44,534,742 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01745,559,035 - 45,559,108 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01743,919,322 - 43,919,395 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01757,911,865 - 57,911,938 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01745,774,114 - 45,774,187 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01758,935,816 - 58,935,889 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01055,388,147 - 55,388,220 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01055,440,106 - 55,440,179 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01055,360,947 - 55,361,020 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0192,616,999 - 92,617,072 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1741,303,396 - 41,303,469 (-)NCBICelera
Celera1752,995,280 - 52,995,353 (-)NCBICelera
Celera1753,968,574 - 53,968,647 (-)NCBICelera
Celera1753,776,191 - 53,776,264 (+)NCBICelera
Celera1052,929,689 - 52,929,762 (-)NCBICelera
Celera1052,980,995 - 52,981,068 (+)NCBICelera
Celera1052,902,804 - 52,902,877 (+)NCBICelera
Celera182,233,482 - 82,233,555 (-)NCBICelera
Cytogenetic Map1 NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Genomics

Position Markers
QTLs in Region (Rnor_6.0)

Sequence

Nucleotide Sequences

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Trnat-agu
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 6576114
Created: 2012-07-05
Species: Rattus norvegicus
Last Modified: 2016-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.