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Gene: Trnak-cuu (transfer RNA lysine (anticodon CUU)) Rattus norvegicus
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Symbol: Trnak-cuu
Name: transfer RNA lysine (anticodon CUU)
Description: This record serves to anchor the annotation of tRNAs of this class on the rat genome. The placement is predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).[provided by RefSeq, May 2010]
Type: trna
RefSeq Status: MODEL
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Note: This tRNA anchor locus is annotated at 17 distinct locations on the reference assembly in Rattus norvegicus Annotation Release 105, which are not displayed in Gene. The complete set of locations can be downloaded from the annotation files provided at ftp://ftp.ncbi.nih.gov/genomes/Rattus_norvegicus [19 Aug 2014]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01271,647,641 - 271,647,713 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0910,681,363 - 10,681,435 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01271,565,594 - 271,565,666 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01268,204,746 - 268,204,818 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01267,917,405 - 267,917,477 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01012,876,099 - 12,876,171 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01034,182,169 - 34,182,241 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01012,861,168 - 12,861,240 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01012,854,342 - 12,854,414 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01012,852,738 - 12,852,810 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01714,460,122 - 14,460,194 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.02141,888,434 - 141,888,506 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.02198,567,936 - 198,568,008 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.02198,636,994 - 198,637,066 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.02198,630,130 - 198,630,202 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0693,417,550 - 93,417,622 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.07107,036,125 - 107,036,197 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07106,980,542 - 106,980,614 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.099,673,098 - 9,673,170 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.06102,863,393 - 102,863,465 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02218,117,039 - 218,117,111 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02218,123,928 - 218,124,000 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02218,055,783 - 218,055,855 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02161,575,674 - 161,575,746 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01716,522,086 - 16,522,158 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01012,674,035 - 12,674,107 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01012,675,639 - 12,675,711 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01012,682,465 - 12,682,537 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01033,965,866 - 33,965,938 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01012,697,396 - 12,697,468 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01275,347,435 - 275,347,507 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01275,642,372 - 275,642,444 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01279,075,322 - 279,075,394 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01278,993,635 - 278,993,707 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,298,940 - 7,299,012 (+)NCBICelera
Celera1243,068,075 - 243,068,147 (-)NCBICelera
Celera794,603,916 - 94,603,988 (+)NCBICelera
Celera687,960,373 - 87,960,445 (-)NCBICelera
Celera2176,573,061 - 176,573,133 (-)NCBICelera
Celera2176,510,016 - 176,510,088 (+)NCBICelera
Celera2131,251,165 - 131,251,237 (+)NCBICelera
Celera1714,350,752 - 14,350,824 (+)NCBICelera
Celera1012,256,449 - 12,256,521 (-)NCBICelera
Celera1012,258,053 - 12,258,125 (-)NCBICelera
Celera1012,264,744 - 12,264,816 (-)NCBICelera
Celera1032,587,820 - 32,587,892 (-)NCBICelera
Celera1012,279,391 - 12,279,463 (+)NCBICelera
Celera1242,789,943 - 242,790,015 (-)NCBICelera
Celera890,217,050 - 90,217,122 (-)NCBICelera
Cytogenetic Map1 NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Genomics

Position Markers
QTLs in Region (Rnor_6.0)

Sequence

Nucleotide Sequences
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Trnak-cuu
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 6576126
Created: 2012-07-05
Species: Rattus norvegicus
Last Modified: 2016-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.