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Gene: Lypd3 (Ly6/Plaur domain containing 3) Rattus norvegicus
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Symbol: Lypd3
Name: Ly6/Plaur domain containing 3
Description: Exhibits laminin binding activity. Involved in cell-matrix adhesion. Localizes to the integral component of membrane. Orthologous to human LYPD3 (LY6/PLAUR domain containing 3); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: C4.4a; GPI-anchored metastasis-associated protein C4.4A; GPI-anchored metastasis-associated protein homolog; ly6/PLAUR domain-containing protein 3; metastasis-associated GPI-anchored protein; metastasis-associated molecule
Orthologs:
Homo sapiens (human) : LYPD3 (LY6/PLAUR domain containing 3)  HGNC  Alliance
Mus musculus (house mouse) : Lypd3 (Ly6/Plaur domain containing 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lypd3 (LY6/PLAUR domain containing 3)
Pan paniscus (bonobo/pygmy chimpanzee) : LYPD3 (LY6/PLAUR domain containing 3)
Canis lupus familiaris (dog) : LYPD3 (LY6/PLAUR domain containing 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lypd3 (LY6/PLAUR domain containing 3)
Sus scrofa (pig) : LYPD3 (LY6/PLAUR domain containing 3)
more info ...
Is Marker For: Strains:   BDX  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0181,499,856 - 81,504,306 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,499,821 - 81,504,318 (+)Ensembl
Rnor_5.0182,757,258 - 82,761,708 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,917,952 - 79,922,402 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1179,996,062 - 80,000,513 (+)NCBI
Celera174,678,988 - 74,683,438 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Lypd3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 69053
Created: 2001-11-08
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.