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Gene: Sycp2 (synaptonemal complex protein 2) Rattus norvegicus
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Symbol: Sycp2
Name: synaptonemal complex protein 2
CRRD ID: 69429
Description: Predicted to have DNA binding activity. Predicted to be involved in several processes, including male genitalia morphogenesis; meiotic nuclear division; and mitotic G1 phase. Localizes to lateral element. Human ortholog(s) of this gene implicated in spermatogenic failure 1. Orthologous to human SYCP2 (synaptonemal complex protein 2); INTERACTS WITH 2-ethoxyethanol; 2-methoxyethanol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: rnSCP2; SCP-2; synaptonemal complex lateral element protein
Orthologs:
Homo sapiens (human) : SYCP2 (synaptonemal complex protein 2)  HGNC  Alliance
Mus musculus (house mouse) : Sycp2 (synaptonemal complex protein 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sycp2 (synaptonemal complex protein 2)
Pan paniscus (bonobo/pygmy chimpanzee) : SYCP2 (synaptonemal complex protein 2)
Canis lupus familiaris (dog) : SYCP2 (synaptonemal complex protein 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sycp2 (synaptonemal complex protein 2)
Sus scrofa (pig) : SYCP2 (synaptonemal complex protein 2)
Chlorocebus sabaeus (African green monkey) : SYCP2 (synaptonemal complex protein 2)
Heterocephalus glaber (naked mole-rat) : Sycp2 (synaptonemal complex protein 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03173,884,559 - 173,948,304 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3173,884,287 - 173,947,018 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03183,144,181 - 183,206,650 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43167,437,522 - 167,502,083 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13167,343,557 - 167,408,119 (-)NCBI
Celera3167,063,122 - 167,125,089 (+)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Sycp2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 69429
Created: 2001-11-27
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.