 Gene-Chemical Interaction Annotations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations |
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Analyze GeneStrainQTL List |
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Gene Annotator (Annotation Comparison) |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | GOA_HUMAN data from the GO Consortium |
| 2. | Offenberg HH, etal., Nucleic Acids Res 1998 Jun 1;26(11):2572-9. |
| 3. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 4. | RGD automated import pipeline for gene-chemical interactions |
References - uncuratedGenomics
Comparative Map Data| SYCP2 (Homo sapiens - human) |
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| Sycp2 (Mus musculus - house mouse) |
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| Sycp2 (Rattus norvegicus - Norway rat) |
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| Sycp2 (Chinchilla lanigera - long-tailed chinchilla) |
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| SYCP2 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| SYCP2 (Canis lupus familiaris - dog) |
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| Sycp2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| SYCP2 (Sus scrofa - pig) |
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Position Markers| RH92762 |
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| SHGC-81285 |
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| SHGC-79529 |
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| SYCP2_9099 |
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miRNA Target Status
Predicted Target Of
| The detailed report is available here: |  | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
Sequence
Nucleotide Sequences| RefSeq Transcripts | NG_046980 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| NM_014258 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_011528487 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_011528488 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_011528489 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_011528490 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_011528493 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017027586 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017027587 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017027588 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017027589 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017027590 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017027591 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017027592 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AK308889 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AL080226 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AL109928 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AL158092 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC040566 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC132864 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC132870 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC146798 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BQ575787 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BX648091 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BX649108 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH471077 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| DB443704 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| DB636651 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| KF456972 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| Y08982 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | NM_014258 ⟹ NP_055073 | ||||||||||||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | ||||||||||||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||||||||||||
| Position: |
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| Sequence: |
GGAGGCGCTGCGGCGGTCCCTGAGGCGCAGAGTTGCGACGCTCGGCGGCATAGGGGGCGGCTCChide sequence |
| RefSeq Acc Id: | XM_011528487 ⟹ XP_011526789 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTCCGCCGTTCGCCGGAGGCGCTGCGGCGGTCCCTGAGGCGCAGAGTTGCGACGCTCGGCGGCAhide sequence |
| RefSeq Acc Id: | XM_011528488 ⟹ XP_011526790 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CGGCCTCGGGGATGGGAAATGGGCGCTCGGAGCCGCCCCCGCGCGTGGGCGACTCGGTCAAGAThide sequence |
| RefSeq Acc Id: | XM_011528489 ⟹ XP_011526791 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
AGTTCGCGGCGAGGGTGGCTCGCGCAGGCGCGAGGCTCCCCATCAGCACCTGCCTGGCCAGCCThide sequence |
| RefSeq Acc Id: | XM_011528490 ⟹ XP_011526792 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTCCGCCGTTCGCCGGAGGCGCTGCGGCGGTCCCTGAGGCGCAGAGTTGCGACGCTCGGCGGCAhide sequence |
| RefSeq Acc Id: | XM_011528493 ⟹ XP_011526795 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GGATTGGACGGGCGCTTCCCGCCTTCCGCCGTTCGCCGGAGGCGCTGCGGCGGTCCCTGAGGCGhide sequence |
| RefSeq Acc Id: | XM_017027586 ⟹ XP_016883075 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CAGGTGATCCACCTGCCTCGGCTTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCTCGCCCGhide sequence |
| RefSeq Acc Id: | XM_017027587 ⟹ XP_016883076 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CAGGTGATCCACCTGCCTCGGCTTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCTCGCCCGhide sequence |
| RefSeq Acc Id: | XM_017027588 ⟹ XP_016883077 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TCAGGTGATCCACCTGCCTCGGCTTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCTCGCCChide sequence |
| RefSeq Acc Id: | XM_017027589 ⟹ XP_016883078 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TCAGGTGATCCACCTGCCTCGGCTTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCTCGCCChide sequence |
| RefSeq Acc Id: | XM_017027590 ⟹ XP_016883079 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TCCGCCGTTCGCCGGAGGCGCTGCGGCGGTCCCTGAGGCGCAGAGTTGCGACGCTCGGCGGCAThide sequence |
| RefSeq Acc Id: | XM_017027591 ⟹ XP_016883080 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CTCCATCCTACTCCATTCCCATAATAAAACTCAGTGATTAAGAAAAAATTAGGCTTCTAAGTTThide sequence |
| RefSeq Acc Id: | XM_017027592 ⟹ XP_016883081 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CCTCAGGTGATCCACCTGCCTCGGCTTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCTCGChide sequence |
Protein Sequences| Protein RefSeqs | NP_055073 | (Get FASTA) | NCBI Sequence Viewer |
| XP_011526789 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_011526790 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_011526791 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_011526792 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_011526795 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_016883075 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_016883076 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_016883077 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_016883078 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_016883079 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_016883080 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_016883081 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAH40566 | (Get FASTA) | NCBI Sequence Viewer |
| AAI32865 | (Get FASTA) | NCBI Sequence Viewer | |
| AAI32871 | (Get FASTA) | NCBI Sequence Viewer | |
| AAI46799 | (Get FASTA) | NCBI Sequence Viewer | |
| CAA70171 | (Get FASTA) | NCBI Sequence Viewer | |
| CAB45780 | (Get FASTA) | NCBI Sequence Viewer | |
| EAW75426 | (Get FASTA) | NCBI Sequence Viewer | |
| EAW75427 | (Get FASTA) | NCBI Sequence Viewer | |
| Q9BX26 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_055073 ⟸ NM_014258 |
| - UniProtKB: | Q9BX26 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MPIRPDLQQLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKVDNLICRELNKEDIHhide sequence |
| RefSeq Acc Id: | XP_011526789 ⟸ XM_011528487 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MPIRPDLQVCSPRPKQLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKVDNLICREhide sequence |
| RefSeq Acc Id: | XP_011526792 ⟸ XM_011528490 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MPIRPDLQLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKVDNLICRELNKEDIHNhide sequence |
| RefSeq Acc Id: | XP_011526795 ⟸ XM_011528493 |
| - Peptide Label: | isoform X7 |
| - Sequence: |
MMSVMKIIKKMNAMLDKMPQDARKILSNQEMLILMSSMGERILDAGDYDLQVGIVEALCRMTTEhide sequence |
| RefSeq Acc Id: | XP_011526791 ⟸ XM_011528489 |
| - Peptide Label: | isoform X3 |
| - UniProtKB: | Q9BX26 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MPIRPDLQQLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKVDNLICRELNKEDIHhide sequence |
| RefSeq Acc Id: | XP_011526790 ⟸ XM_011528488 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MPIRPDLQVCSPRPKQLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKVDNLICREhide sequence |
| RefSeq Acc Id: | XP_016883079 ⟸ XM_017027590 |
| - Peptide Label: | isoform X7 |
| - Sequence: |
MMSVMKIIKKMNAMLDKMPQDARKILSNQEMLILMSSMGERILDAGDYDLQVGIVEALCRMTTEhide sequence |
| RefSeq Acc Id: | XP_016883078 ⟸ XM_017027589 |
| - Peptide Label: | isoform X6 |
| - Sequence: |
MPIRPDLQVCSPRPKQLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKVDNLICREhide sequence |
| RefSeq Acc Id: | XP_016883077 ⟸ XM_017027588 |
| - Peptide Label: | isoform X5 |
| - Sequence: |
MPIRPDLQVCSPRPKQLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKVDNLICREhide sequence |
| RefSeq Acc Id: | XP_016883076 ⟸ XM_017027587 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MPIRPDLQVCSPRPKLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKVDNLICRELhide sequence |
| RefSeq Acc Id: | XP_016883075 ⟸ XM_017027586 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MPIRPDLQVCSPRPKQLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKVDNLICREhide sequence |
| RefSeq Acc Id: | XP_016883080 ⟸ XM_017027591 |
| - Peptide Label: | isoform X8 |
| - Sequence: |
MSEASMIVSGADRYTMRSPVLFSNTSIPPRRRRIKPPLQMTSSAEKPSVSQTSENRVDNAASLKhide sequence |
| RefSeq Acc Id: | XP_016883081 ⟸ XM_017027592 |
| - Peptide Label: | isoform X9 |
| - Sequence: |
MPIRPDLQVCSPRPKQLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKVDNLICREhide sequence |
Promoters| RGD ID: | 6798572 | |||||||||
| Promoter ID: | HG_KWN:40031 | |||||||||
| Type: | CpG-Island | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | MPROMDB | |||||||||
| Tissues & Cell Lines: | CD4+TCell, CD4+TCell_12Hour, Jurkat, K562, Lymphoblastoid | |||||||||
| Transcripts: | ENST00000357552, ENST00000358293, OTTHUMT00000268132, OTTHUMT00000268133 | |||||||||
| Position: |
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| RGD ID: | 13602282 | |||||||||
| Promoter ID: | EPDNEW_H27325 | |||||||||
| Type: | initiation region | |||||||||
| Name: | SYCP2_3 | |||||||||
| Description: | synaptonemal complex protein 2 | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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| RGD ID: | 13602284 | |||||||||
| Promoter ID: | EPDNEW_H27326 | |||||||||
| Type: | initiation region | |||||||||
| Name: | SYCP2_2 | |||||||||
| Description: | synaptonemal complex protein 2 | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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| RGD ID: | 13602286 | |||||||||
| Promoter ID: | EPDNEW_H27327 | |||||||||
| Type: | initiation region | |||||||||
| Name: | SYCP2_1 | |||||||||
| Description: | synaptonemal complex protein 2 | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | |||||||||
| Position: |
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Clinical Variants| Name | Type | Condition(s) | Position(s) | Clinical significance |
| GRCh38/hg38 20q13.12-13.33(chr20:44787704-64277321)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053035]|Abnormality of the heart [RCV000053036]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053035]|See cases [RCV000053035] | Chr20:44787704..64277321 [GRCh38] Chr20:43416345..62908674 [GRCh37] Chr20:42849759..62379118 [NCBI36] Chr20:20q13.12-13.33 |
pathogenic |
| NM_014258.2(SYCP2):c.1644T>A (p.His548Gln) | single nucleotide variant | Malignant melanoma [RCV000072733] | Chr20:59895458 [GRCh38] Chr20:58470513 [GRCh37] Chr20:57903908 [NCBI36] Chr20:20q13.33 |
not provided |
| NM_014258.4(SYCP2):c.2365-8T>C | single nucleotide variant | Malignant tumor of prostate [RCV000149208] | Chr20:59886842 [GRCh38] Chr20:58461897 [GRCh37] Chr20:20q13.33 |
uncertain significance |
| GRCh38/hg38 20q13.32-13.33(chr20:59041966-64277321)x3 | copy number gain | See cases [RCV000135805] | Chr20:59041966..64277321 [GRCh38] Chr20:57617021..62908674 [GRCh37] Chr20:57050416..62379118 [NCBI36] Chr20:20q13.32-13.33 |
pathogenic |
| GRCh38/hg38 20p13-q13.33(chr20:99557-64277321)x3 | copy number gain | See cases [RCV000135859] | Chr20:99557..64277321 [GRCh38] Chr20:80198..62908674 [GRCh37] Chr20:28198..62379118 [NCBI36] Chr20:20p13-q13.33 |
pathogenic |
| GRCh38/hg38 20q13.2-13.33(chr20:55630597-60941207)x3 | copy number gain | See cases [RCV000135622] | Chr20:55630597..60941207 [GRCh38] Chr20:54220678..59516263 [GRCh37] Chr20:53639062..58949658 [NCBI36] Chr20:20q13.2-13.33 |
likely pathogenic |
| GRCh38/hg38 20q13.2-13.33(chr20:56198032-64277321)x3 | copy number gain | See cases [RCV000138035] | Chr20:56198032..64277321 [GRCh38] Chr20:54773088..62908674 [GRCh37] Chr20:54206495..62379118 [NCBI36] Chr20:20q13.2-13.33 |
pathogenic |
| GRCh38/hg38 20q13.31-13.33(chr20:57229415-64273089)x3 | copy number gain | See cases [RCV000141347] | Chr20:57229415..64273089 [GRCh38] Chr20:55804471..62904442 [GRCh37] Chr20:55237878..62374886 [NCBI36] Chr20:20q13.31-13.33 |
pathogenic |
| GRCh38/hg38 20q13.2-13.33(chr20:53236165-64284202)x3 | copy number gain | See cases [RCV000143584] | Chr20:53236165..64284202 [GRCh38] Chr20:51852704..62915555 [GRCh37] Chr20:51286111..62385999 [NCBI36] Chr20:20q13.2-13.33 |
likely pathogenic |
| GRCh37/hg19 20q13.33(chr20:58444946-58533817)x3 | copy number gain | Ductal breast carcinoma [RCV000207310] | Chr20:58444946..58533817 [GRCh37] Chr20:20q13.33 |
uncertain significance |
| GRCh37/hg19 20q13.2-13.33(chr20:51542616-62915555)x3 | copy number gain | See cases [RCV000511980] | Chr20:51542616..62915555 [GRCh37] Chr20:20q13.2-13.33 |
likely pathogenic |
| GRCh37/hg19 20p13-q13.33(chr20:61569-62915555)x3 | copy number gain | See cases [RCV000510832] | Chr20:61569..62915555 [GRCh37] Chr20:20p13-q13.33 |
pathogenic |
| GRCh37/hg19 20p13-q13.33(chr20:61569-62915555) | copy number gain | See cases [RCV000512450] | Chr20:61569..62915555 [GRCh37] Chr20:20p13-q13.33 |
pathogenic |
| GRCh37/hg19 20q13.32-13.33(chr20:58342058-59978526)x3 | copy number gain | not provided [RCV000684131] | Chr20:58342058..59978526 [GRCh37] Chr20:20q13.32-13.33 |
uncertain significance |
| GRCh37/hg19 20p13-q13.33(chr20:63244-62948788)x3 | copy number gain | not provided [RCV000741058] | Chr20:63244..62948788 [GRCh37] Chr20:20p13-q13.33 |
pathogenic |
| GRCh37/hg19 20p13-q13.33(chr20:63244-62961294)x3 | copy number gain | not provided [RCV000741059] | Chr20:63244..62961294 [GRCh37] Chr20:20p13-q13.33 |
pathogenic |
| GRCh37/hg19 20q13.33(chr20:58416428-58554011)x3 | copy number gain | not provided [RCV000741297] | Chr20:58416428..58554011 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20q13.33(chr20:58436963-58496439)x3 | copy number gain | not provided [RCV000741298] | Chr20:58436963..58496439 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20q13.33(chr20:58436963-58500453)x3 | copy number gain | not provided [RCV000741299] | Chr20:58436963..58500453 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20q13.33(chr20:58436963-58502456)x3 | copy number gain | not provided [RCV000741300] | Chr20:58436963..58502456 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20q13.33(chr20:58436963-58516788)x3 | copy number gain | not provided [RCV000741301] | Chr20:58436963..58516788 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20q13.33(chr20:58436963-58524284)x3 | copy number gain | not provided [RCV000741302] | Chr20:58436963..58524284 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20q13.33(chr20:58440630-58496439)x3 | copy number gain | not provided [RCV000741303] | Chr20:58440630..58496439 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20q13.33(chr20:58440630-58500453)x3 | copy number gain | not provided [RCV000741304] | Chr20:58440630..58500453 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20q13.33(chr20:58440630-58502456)x3 | copy number gain | not provided [RCV000741305] | Chr20:58440630..58502456 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20q13.33(chr20:58440630-58502648)x3 | copy number gain | not provided [RCV000741306] | Chr20:58440630..58502648 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20q13.33(chr20:58440630-58511286)x3 | copy number gain | not provided [RCV000741307] | Chr20:58440630..58511286 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20q13.33(chr20:58440630-58516788)x3 | copy number gain | not provided [RCV000741308] | Chr20:58440630..58516788 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20q13.33(chr20:58440630-58524284)x3 | copy number gain | not provided [RCV000741309] | Chr20:58440630..58524284 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20q13.33(chr20:58440630-58528449)x3 | copy number gain | not provided [RCV000741310] | Chr20:58440630..58528449 [GRCh37] Chr20:20q13.33 |
benign |
| GRCh37/hg19 20p13-q13.33(chr20:63244-62912463)x3 | copy number gain | not provided [RCV000741057] | Chr20:63244..62912463 [GRCh37] Chr20:20p13-q13.33 |
pathogenic |
| GRCh37/hg19 20q13.2-13.33(chr20:54143747-62194881) | copy number gain | not provided [RCV000767669] | Chr20:54143747..62194881 [GRCh37] Chr20:20q13.2-13.33 |
pathogenic |
Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | HGNC:11490 | AgrOrtholog |
| COSMIC | SYCP2 | COSMIC |
| Ensembl Genes | ENSG00000196074 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSP00000350162 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSP00000360040 | UniProtKB/Swiss-Prot | |
| ENSP00000399300 | UniProtKB/TrEMBL | |
| ENSP00000402456 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSP00000404358 | UniProtKB/TrEMBL | |
| Ensembl Transcript | ENST00000357552 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENST00000371001 | UniProtKB/Swiss-Prot | |
| ENST00000412613 | UniProtKB/TrEMBL | |
| ENST00000425931 | UniProtKB/TrEMBL | |
| ENST00000446834 | ENTREZGENE, UniProtKB/TrEMBL | |
| GTEx | ENSG00000196074 | GTEx |
| HGNC ID | HGNC:11490 | ENTREZGENE |
| Human Proteome Map | SYCP2 | Human Proteome Map |
| InterPro | SYCP1/2 | UniProtKB/Swiss-Prot |
| SYCP2 | UniProtKB/Swiss-Prot | |
| SYCP2_ARLD | UniProtKB/Swiss-Prot | |
| SYCP2_SLD | UniProtKB/Swiss-Prot | |
| KEGG Report | hsa:10388 | UniProtKB/Swiss-Prot |
| NCBI Gene | 10388 | ENTREZGENE |
| OMIM | 604105 | OMIM |
| PANTHER | PTHR15607 | UniProtKB/Swiss-Prot |
| PTHR15607:SF12 | UniProtKB/Swiss-Prot | |
| Pfam | SYCP2_ARLD | UniProtKB/Swiss-Prot |
| SYCP2_SLD | UniProtKB/Swiss-Prot | |
| PharmGKB | PA36272 | PharmGKB |
| UniGene | Hs.202676 | ENTREZGENE |
| UniProt | A2A2M9_HUMAN | UniProtKB/TrEMBL |
| A2A340_HUMAN | UniProtKB/TrEMBL | |
| A2A341_HUMAN | UniProtKB/TrEMBL | |
| A6QL60_HUMAN | UniProtKB/TrEMBL | |
| Q8IWA1_HUMAN | UniProtKB/TrEMBL | |
| Q9BX26 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| UniProt Secondary | A2RUE5 | UniProtKB/Swiss-Prot |
| O75763 | UniProtKB/Swiss-Prot | |
| Q5JX11 | UniProtKB/Swiss-Prot | |
| Q9NTX8 | UniProtKB/Swiss-Prot | |
| Q9UG27 | UniProtKB/Swiss-Prot |
 |
| More on SYCP2 | |
|
Alliance Gene |
|
NCBI Gene |
|
Ensembl Gene |
|
|
JBrowse: hg19 hg38 |
|
HGNC Report |
|
NCBI Genome Data Viewer |
| CRRD Object Information | |
| CRRD ID: | 69483 |
| Created: | 2001-11-27 |
| Species: | Homo sapiens |
| Last Modified: | 2019-11-26 |
| Status: | ACTIVE |
