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Gene: Vmp1 (vacuole membrane protein 1) Rattus norvegicus
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Symbol: Vmp1
Name: vacuole membrane protein 1
Description: Involved in autophagy. Localizes to autophagosome membrane. Orthologous to human VMP1 (vacuole membrane protein 1); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Tmem49; transmembrane protein 49
Orthologs:
Homo sapiens (human) : VMP1 (vacuole membrane protein 1)  HGNC  Alliance
Mus musculus (house mouse) : Vmp1 (vacuole membrane protein 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vmp1 (vacuole membrane protein 1)
Pan paniscus (bonobo/pygmy chimpanzee) : VMP1 (vacuole membrane protein 1)
Canis lupus familiaris (dog) : VMP1 (vacuole membrane protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vmp1 (vacuole membrane protein 1)
Chlorocebus sabaeus (African green monkey) : VMP1 (vacuole membrane protein 1)
Heterocephalus glaber (naked mole-rat) : Vmp1 (vacuole membrane protein 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01073,901,988 - 74,001,900 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1073,902,837 - 74,001,895 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01076,098,589 - 76,197,394 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41074,865,123 - 74,964,158 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11074,879,495 - 74,978,528 (-)NCBI
Celera1070,326,998 - 70,425,606 (-)NCBICelera
Cytogenetic Map10q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Vmp1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 70367
Created: 2002-03-20
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.