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Gene: Phrf1 (PHD and ring finger domains 1) Rattus norvegicus
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Symbol: Phrf1
Name: PHD and ring finger domains 1
Description: Exhibits RNA polymerase binding activity and protein domain specific binding activity. Involved in mRNA processing and transcription by RNA polymerase II. Orthologous to human PHRF1 (PHD and ring finger domains 1); INTERACTS WITH ammonium chloride; bisphenol A; ketamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: CTD-binding SR-like protein rA9; LOC245925; PHD and RING finger domain-containing protein 1
Orthologs:
Homo sapiens (human) : PHRF1 (PHD and ring finger domains 1)  HGNC  Alliance
Mus musculus (house mouse) : Phrf1 (PHD and ring finger domains 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Phrf1 (PHD and ring finger domains 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PHRF1 (PHD and ring finger domains 1)
Canis lupus familiaris (dog) : PHRF1 (PHD and ring finger domains 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Phrf1 (PHD and ring finger domains 1)
Sus scrofa (pig) : PHRF1 (PHD and ring finger domains 1)
Chlorocebus sabaeus (African green monkey) : PHRF1 (PHD and ring finger domains 1)
Heterocephalus glaber (naked mole-rat) : Phrf1 (PHD and ring finger domains 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01214,215,673 - 214,248,906 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1214,215,992 - 214,248,901 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,133,212 - 221,166,448 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41201,423,348 - 201,456,202 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11201,574,347 - 201,607,202 (+)NCBI
Celera1193,967,903 - 194,000,757 (+)NCBICelera
Cytogenetic Map1q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Phrf1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 708360
Created: 2003-09-23
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.