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Gene: Jmjd1c (jumonji domain containing 1C) Rattus norvegicus
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Symbol: Jmjd1c
Name: jumonji domain containing 1C
Description: Predicted to have chromatin DNA binding activity; histone demethylase activity (H3-K9 specific); and transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including male germ-line stem cell population maintenance; reproductive senescence; and seminiferous tubule development. Predicted to localize to the chromatin and nucleus. Orthologous to human JMJD1C (jumonji domain containing 1C); PARTICIPATES IN histone modification pathway; INTERACTS WITH (RS)-amphetamine; (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC171120; LOC309738; Pr2; probable JmjC domain-containing histone demethylation protein 2C
Orthologs:
Homo sapiens (human) : JMJD1C (jumonji domain containing 1C)  HGNC  Alliance
Mus musculus (house mouse) : Jmjd1c (jumonji domain containing 1C)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Jmjd1c (jumonji domain containing 1C)
Pan paniscus (bonobo/pygmy chimpanzee) : JMJD1C (jumonji domain containing 1C)
Canis lupus familiaris (dog) : JMJD1C (jumonji domain containing 1C)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Jmjd1c (jumonji domain containing 1C)
Sus scrofa (pig) : JMJD1C (jumonji domain containing 1C)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02022,751,743 - 22,914,080 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2022,751,743 - 22,882,672 (-)Ensembl
Rnor_5.02024,842,479 - 25,004,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42022,151,774 - 22,283,264 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12022,165,991 - 22,172,529 (-)NCBI
Celera2022,690,312 - 22,820,989 (-)NCBICelera
Cytogenetic Map20p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Jmjd1c
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 708458
Created: 2003-09-23
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.