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Gene: Arid1b (AT-rich interaction domain 1B) Rattus norvegicus
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Symbol: Arid1b
Name: AT-rich interaction domain 1B
Description: Predicted to have DNA-binding transcription factor activity. Involved in cellular response to angiotensin and response to ischemia. Localizes to the cytoplasm and nucleus. Used to study ischemia. Biomarker of hypertension and ischemia. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome; Coffin-Siris syndrome 1; intellectual disability; and neuroblastoma. Orthologous to human ARID1B (AT-rich interaction domain 1B); PARTICIPATES IN altered SWI/SNF family mediated chromatin remodeling pathway; pancreatic cancer pathway; SWI/SNF family mediated chromatin remodeling pathway; INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2,4-dinitrotoluene; ammonium chloride.
Type: protein-coding
RefSeq Status: MODEL
Also known as: 6A3-5; AT rich interactive domain 1B (Swi1 like); AT-rich interactive domain-containing protein 1B; LOC308086; LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1B; smcf-1; Smcf1; transcription factor 1
Orthologs:
Homo sapiens (human) : ARID1B (AT-rich interaction domain 1B)  HGNC  Alliance
Mus musculus (house mouse) : Arid1b (AT rich interactive domain 1B (SWI-like))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Arid1b (AT-rich interaction domain 1B)
Pan paniscus (bonobo/pygmy chimpanzee) : ARID1B (AT-rich interaction domain 1B)
Canis lupus familiaris (dog) : ARID1B (AT-rich interaction domain 1B)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Arid1b (AT-rich interaction domain 1B)
Sus scrofa (pig) : ARID1B (AT-rich interaction domain 1B)
more info ...
Allele / Splice: Arid1bem1Mcwi  
Genetic Models: LE-Arid1bem1Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0145,923,119 - 46,232,301 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0147,197,399 - 47,550,032 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4140,012,872 - 40,324,266 (+)NCBIRGSC3.4rn4RGSC3.4
Celera141,265,931 - 41,618,978 (+)NCBICelera
Cytogenetic Map1q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Genetic Models
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Arid1b
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 708504
Created: 2003-09-23
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.